AutismKB 2.0

Annotation Detail for SLCO3A1


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Basic Information Top
Gene Symbol:SLCO3A1 ( FLJ40478,OATP-D,OATP3A1,OATPD,SLC21A11 )
Gene Full Name: solute carrier organic anion transporter family, member 3A1
Band: 15q26.1
Quick LinksEntrez ID:28232; OMIM: 612435; Uniprot ID:SO3A1_HUMAN; ENSEMBL ID: ENSG00000176463; HGNC ID: 10952
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus23 / 56401240
neonate0 / 310970 
infant0 / 236200 
juvenile4 / 5555671
adult54 / 193912127
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor4 / 11936933
germ cell tumor12 / 26384545
glioma6 / 10688356
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal112 / 336030733
ovarian tumor6 / 7668278
pancreatic tumor23 / 104616219
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor11 / 12494988
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites2 / 4001549
bladder0 / 297570 
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain28 / 110098925
cervix1 / 4817120
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus1 / 2020949
eye17 / 21105480
heart3 / 8962633
intestine1 / 2344724
kidney0 / 2117770 
larynx1 / 2414541
liver6 / 20774328
lung22 / 33697465
lymph1 / 4427022
lymph node10 / 91610109
mammary gland4 / 15327126
mouth2 / 6705229
muscle3 / 10771527
nerve2 / 15768126
ovary7 / 10205168
pancreas23 / 214812107
parathyroid2 / 2053997
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin12 / 21057456
spleen0 / 539520 
stomach2 / 9661920
testis32 / 33044296
thymus1 / 8113112
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219229_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.15
Adipocyte9.15
AdrenalCortex7.25
Adrenalgland5.05
Amygdala7.5
Appendix7.2
AtrioventricularNode4.95
BDCA4+_DentriticCells20.85
Bonemarrow6.45
BronchialEpithelialCells8
CD105+_Endothelial6.35
CD14+_Monocytes336.85
CD19+_BCells(neg._sel.)6.35
CD33+_Myeloid213.55
CD34+8.85
CD4+_Tcells30
CD56+_NKCells75.05
CD71+_EarlyErythroid5.75
CD8+_Tcells29.2
CardiacMyocytes7.6
Caudatenucleus6.25
Cerebellum4.7
CerebellumPeduncles7.95
CiliaryGanglion4.6
CingulateCortex21.8
Colorectaladenocarcinoma7.8
DorsalRootGanglion4.45
FetalThyroid10.1
Fetalbrain5.4
Fetalliver5
Fetallung6.9
GlobusPallidus5
Heart8
Hypothalamus44.45
Kidney4.7
Leukemia_chronicMyelogenousK-5625.15
Leukemia_promyelocytic-HL-605.75
Leukemialymphoblastic(MOLT-4)4.3
Liver7.95
Lung11.85
Lymphnode5.9
Lymphoma_burkitts(Daudi)19.65
Lymphoma_burkitts(Raji)8.15
MedullaOblongata28.15
OccipitalLobe45.65
OlfactoryBulb29.4
Ovary3.75
Pancreas4.9
PancreaticIslet7.6
ParietalLobe45.2
Pituitary7.2
Placenta5.2
Pons6.75
PrefrontalCortex8.85
Prostate8.1
Salivarygland4.55
SkeletalMuscle7.3
Skin6
SmoothMuscle18.55
Spinalcord18.25
SubthalamicNucleus5.7
SuperiorCervicalGanglion7.05
TemporalLobe6
Testis158.9
TestisGermCell120.3
TestisIntersitial114.75
TestisLeydigCell60.3
TestisSeminiferousTubule99.3
Thalamus7.5
Thymus4.9
Thyroid12.9
Tongue12.3
Tonsil6.7
Trachea4.8
TrigeminalGanglion6.2
Uterus4.95
UterusCorpus5.3
WholeBlood81.85
Wholebrain5.5
colon7.3
pineal_day12.14
pineal_night9.58
retina97.025
small_intestine5.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P588897
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.73 ± 0.51
Basal Forebrain5.76 ± 0.39
Basal Part of Pons6.14 ± 0.42
Cerebellar Cortex6.01 ± 0.2
Cerebellar Nuclei6.61 ± 0.29
Claustrum5.39 ± 0.4
Epithalamus6.23 ± 0.54
Frontal Lobe6.11 ± 0.45
Globus Pallidus6.98 ± 0.33
Hypothalamus5.51 ± 0.41
Insula6 ± 0.45
Limbic Lobe6.35 ± 0.43
Mesencephalon5.92 ± 0.56
Myelencephalon6.05 ± 0.5
Occipital Lobe6.02 ± 0.45
Parietal Lobe6 ± 0.5
Pontine Tegmentum6.16 ± 0.38
Striatum6.18 ± 0.47
Subthalamus6.23 ± 0.51
Temporal Lobe5.89 ± 0.37
Thalamus5.95 ± 0.36
White Matter8.09 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slco3a1CBCerebellum33.15
42.94
Slco3a1CTXCerebral cortex57.34
55.59
Slco3a1HIPHippocampal region43.58
66.95
Slco3a1HPFHippocampal formation46.23
58.72
Slco3a1HYHypothalamus52.25
47.7
Slco3a1LSXLateral septal complex59.3
56.93
Slco3a1MBMidbrain59.2
60.82
Slco3a1MYMedulla69.07
71.28
Slco3a1OLFOlfactory bulb69.88
70.79
Slco3a1PPons66.1
67.87
Slco3a1PALPallidum47.6
47.47
Slco3a1RHPRetrohippocampal region49
46.94
Slco3a1sAMYStriatum-like amygdalar nuclei48.52
41.62
Slco3a1STRStriatum41.42
33.94
Slco3a1STRdStriatum dorsal region36.9
29.44
Slco3a1STRvStriatum ventral region37.47
30.15
Slco3a1THThalamus50.49
48.06
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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