Annotation Detail for PGM2L1
Basic Information Top
| Gene Symbol: | PGM2L1 ( BM32A,FLJ32029 ) |
|---|---|
| Gene Full Name: | phosphoglucomutase 2-like 1 |
| Band: | 11q13.4 |
| Quick Links | Entrez ID:283209; OMIM: 611610; Uniprot ID:PGM2L_HUMAN; ENSEMBL ID: ENSG00000165434; HGNC ID: 20898 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.26612
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 59 / 564012 | 104 |  |
| neonate | 3 / 31097 | 96 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 77 / 1939121 | 39 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 20 / 263845 | 75 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 189 / 3360307 | 56 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 122 / 1100989 | 110 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 13 / 330442 | 39 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P396765
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.77 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 10.12 ± 0.38 | |
| Basal Part of Pons | 10.86 ± 0.48 | |
| Cerebellar Cortex | 10.1 ± 0.22 | |
| Cerebellar Nuclei | 9.77 ± 0.59 | |
| Claustrum | 10.71 ± 0.26 | |
| Epithalamus | 9.58 ± 0.85 | |
| Frontal Lobe | 10.74 ± 0.49 | |
| Globus Pallidus | 8.76 ± 1.16 | |
| Hypothalamus | 10.98 ± 0.36 | |
| Insula | 10.9 ± 0.25 | |
| Limbic Lobe | 11.03 ± 0.73 | |
| Mesencephalon | 10.51 ± 0.86 | |
| Myelencephalon | 10.32 ± 0.89 | |
| Occipital Lobe | 9.92 ± 0.88 | |
| Parietal Lobe | 10.5 ± 0.62 | |
| Pontine Tegmentum | 10.18 ± 0.65 | |
| Striatum | 9.09 ± 1.33 | |
| Subthalamus | 10.68 ± 0.32 | |
| Temporal Lobe | 10.9 ± 0.43 | |
| Thalamus | 10.16 ± 0.51 | |
| White Matter | 8.48 ± 1.02 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pgm2l1 | CB | Cerebellum | 67.22 | |
| 84.36 | | |||
| Pgm2l1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Pgm2l1 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Pgm2l1 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Pgm2l1 | HY | Hypothalamus | 92.95 | |
| 100 | | |||
| Pgm2l1 | LSX | Lateral septal complex | 77.14 | |
| 85.55 | | |||
| Pgm2l1 | MB | Midbrain | 89.47 | |
| 100 | | |||
| Pgm2l1 | MY | Medulla | 71.2 | |
| 92.29 | | |||
| Pgm2l1 | OLF | Olfactory bulb | 90.72 | |
| 100 | | |||
| Pgm2l1 | P | Pons | 77.79 | |
| 100 | | |||
| Pgm2l1 | PAL | Pallidum | 79.24 | |
| 88.77 | | |||
| Pgm2l1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Pgm2l1 | sAMY | Striatum-like amygdalar nuclei | 91.22 | |
| 100 | | |||
| Pgm2l1 | STR | Striatum | 73.5 | |
| 80.01 | | |||
| Pgm2l1 | STRd | Striatum dorsal region | 70.86 | |
| 75.86 | | |||
| Pgm2l1 | STRv | Striatum ventral region | 74.75 | |
| 74.47 | | |||
| Pgm2l1 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00024483 | 16 | 303 | 318 | CPNPEEGESVLELSLR | Peptide Atlas |