Annotation Detail for SLC39A5
Basic Information Top
| Gene Symbol: | SLC39A5 ( LZT-Hs7,MGC34778,ZIP5 ) |
|---|---|
| Gene Full Name: | solute carrier family 39 (metal ion transporter), member 5 |
| Band: | 12q13.3 |
| Quick Links | Entrez ID:283375; OMIM: 608730; Uniprot ID:S39A5_HUMAN; ENSEMBL ID: ENSG00000139540; HGNC ID: 20502 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591018
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 11 / 564012 | 19 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 18 / 1939121 | 9 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 7 / 96359 | 72 |  |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 101 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 6 / 29757 | 201 |  |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 30 / 234472 | 127 | |
| kidney | 37 / 211777 | 174 | |
| larynx | 0 / 24145 | 0 | |
| liver | 17 / 207743 | 81 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P98876
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.35 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.1 ± 0.53 | |
| Basal Part of Pons | 2.7 ± 0.71 | |
| Cerebellar Cortex | 2.91 ± 0.65 | |
| Cerebellar Nuclei | 2.91 ± 0.74 | |
| Claustrum | 3.6 ± 0.85 | |
| Epithalamus | 2.88 ± 0.81 | |
| Frontal Lobe | 2.74 ± 0.71 | |
| Globus Pallidus | 3.67 ± 0.7 | |
| Hypothalamus | 2.75 ± 0.83 | |
| Insula | 2.76 ± 0.72 | |
| Limbic Lobe | 2.96 ± 0.62 | |
| Mesencephalon | 2.98 ± 0.73 | |
| Myelencephalon | 2.88 ± 0.76 | |
| Occipital Lobe | 3.14 ± 0.82 | |
| Parietal Lobe | 2.94 ± 0.75 | |
| Pontine Tegmentum | 2.86 ± 0.69 | |
| Striatum | 2.83 ± 0.72 | |
| Subthalamus | 2.59 ± 0.57 | |
| Temporal Lobe | 2.73 ± 0.82 | |
| Thalamus | 2.86 ± 0.66 | |
| White Matter | 3.24 ± 0.59 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc39a5 | CB | Cerebellum | 17.88 | |
| 19.4 | | |||
| Slc39a5 | CTX | Cerebral cortex | 29.29 | |
| 20.46 | | |||
| Slc39a5 | HIP | Hippocampal region | 23.53 | |
| 17.73 | | |||
| Slc39a5 | HPF | Hippocampal formation | 25.21 | |
| 18.14 | | |||
| Slc39a5 | HY | Hypothalamus | 24.16 | |
| 14.98 | | |||
| Slc39a5 | LSX | Lateral septal complex | 8.34 | |
| 5.01 | | |||
| Slc39a5 | MB | Midbrain | 15.93 | |
| 11.73 | | |||
| Slc39a5 | MY | Medulla | 35.18 | |
| 30.67 | | |||
| Slc39a5 | OLF | Olfactory bulb | 30.43 | |
| 20.56 | | |||
| Slc39a5 | P | Pons | 32.71 | |
| 26.82 | | |||
| Slc39a5 | PAL | Pallidum | 17.22 | |
| 13.32 | | |||
| Slc39a5 | RHP | Retrohippocampal region | 28.15 | |
| 18.69 | | |||
| Slc39a5 | sAMY | Striatum-like amygdalar nuclei | 20.52 | |
| 12.21 | | |||
| Slc39a5 | STR | Striatum | 9.72 | |
| 5.82 | | |||
| Slc39a5 | STRd | Striatum dorsal region | 6.06 | |
| 3.69 | | |||
| Slc39a5 | STRv | Striatum ventral region | 18.63 | |
| 10.26 | | |||
| Slc39a5 | TH | Thalamus | 11.84 | |
| 7.64 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00006395 | 16 | 180 | 195 | QFALLCPALLYQIDSR | Peptide Atlas |