Annotation Detail for FAM177A1
Basic Information Top
| Gene Symbol: | FAM177A1 ( C14orf24,DKFZp686J1254,FLJ38854 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 177, member A1 |
| Band: | 14q13.2 |
| Quick Links | Entrez ID:283635; OMIM: NA; Uniprot ID:F177A_HUMAN; ENSEMBL ID: ENSG00000151327; HGNC ID: 19829 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.446357
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 89 / 1939121 | 45 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 120 / 3360307 | 35 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 16 / 125191 | 127 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 3 / 29757 | 100 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 55 / 1100989 | 49 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 17 / 149255 | 113 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 2 / 89626 | 22 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 21 / 211777 | 99 | |
| larynx | 2 / 24145 | 82 | |
| liver | 4 / 207743 | 19 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 19 / 330442 | 57 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 14 / 232878 | 60 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P2935
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.94 ± 0.62 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.06 ± 0.26 | |
| Basal Part of Pons | 4.82 ± 0.37 | |
| Cerebellar Cortex | 4.77 ± 0.35 | |
| Cerebellar Nuclei | 5.13 ± 0.38 | |
| Claustrum | 4.95 ± 0.76 | |
| Epithalamus | 4.53 ± 0.45 | |
| Frontal Lobe | 4.83 ± 0.48 | |
| Globus Pallidus | 5.9 ± 0.18 | |
| Hypothalamus | 5.21 ± 0.32 | |
| Insula | 4.65 ± 0.3 | |
| Limbic Lobe | 4.82 ± 0.44 | |
| Mesencephalon | 5 ± 0.59 | |
| Myelencephalon | 4.96 ± 0.47 | |
| Occipital Lobe | 5.05 ± 0.47 | |
| Parietal Lobe | 4.9 ± 0.48 | |
| Pontine Tegmentum | 4.99 ± 0.39 | |
| Striatum | 5.11 ± 0.44 | |
| Subthalamus | 5.12 ± 0.24 | |
| Temporal Lobe | 4.85 ± 0.43 | |
| Thalamus | 4.94 ± 0.4 | |
| White Matter | 6.31 ± 0.24 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1700047I17Rik | CB | Cerebellum | 9.61 | |
| 11.25 | | |||
| 1700047I17Rik | CTX | Cerebral cortex | 7.29 | |
| 4.76 | | |||
| 1700047I17Rik | HIP | Hippocampal region | 4.97 | |
| 4.44 | | |||
| 1700047I17Rik | HPF | Hippocampal formation | 6.4 | |
| 5.41 | | |||
| 1700047I17Rik | HY | Hypothalamus | 1.89 | |
| 1.66 | | |||
| 1700047I17Rik | LSX | Lateral septal complex | 0.6 | |
| 0.51 | | |||
| 1700047I17Rik | MB | Midbrain | 2.18 | |
| 2.07 | | |||
| 1700047I17Rik | MY | Medulla | 9.28 | |
| 9.82 | | |||
| 1700047I17Rik | OLF | Olfactory bulb | 6.73 | |
| 6.03 | | |||
| 1700047I17Rik | P | Pons | 2.71 | |
| 2.52 | | |||
| 1700047I17Rik | PAL | Pallidum | 1.63 | |
| 1.43 | | |||
| 1700047I17Rik | RHP | Retrohippocampal region | 8.93 | |
| 6.76 | | |||
| 1700047I17Rik | sAMY | Striatum-like amygdalar nuclei | 1.3 | |
| 1.02 | | |||
| 1700047I17Rik | STR | Striatum | 2.48 | |
| 1.8 | | |||
| 1700047I17Rik | STRd | Striatum dorsal region | 3.36 | |
| 2.38 | | |||
| 1700047I17Rik | STRv | Striatum ventral region | 1.18 | |
| 1.09 | | |||
| 1700047I17Rik | TH | Thalamus | 3.9 | |
| 2.95 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| F177A_HUMAN_1 | 11 | 1 | 11 | MDQEPVGGVER | PRIDE |
| PAp00039299 | 26 | 129 | 154 | AATSTLSVCDFLGEKIASVLGISTPK | Peptide Atlas |