Annotation Detail for TSEN54
Basic Information Top
| Gene Symbol: | TSEN54 ( FLJ37147,PCH2A,PCH4,SEN54L,sen54 ) |
|---|---|
| Gene Full Name: | tRNA splicing endonuclease 54 homolog (S. cerevisiae) |
| Band: | 17q25.1 |
| Quick Links | Entrez ID:283989; OMIM: 608755; Uniprot ID:SEN54_HUMAN; ENSEMBL ID: ENSG00000182173; HGNC ID: 27561 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.378501
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 |  |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 11 / 103127 | 106 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 74 / 3360307 | 22 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 10 / 124949 | 80 | |
| soft tissue/muscle tissue tumor | 9 / 125191 | 71 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 11 / 123478 | 89 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 18 / 336974 | 53 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 10 / 107715 | 92 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 11 / 210574 | 52 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 12 / 96619 | 124 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11283_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.72 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.67 ± 0.29 | |
| Basal Part of Pons | 5.48 ± 0.47 | |
| Cerebellar Cortex | 5.96 ± 0.24 | |
| Cerebellar Nuclei | 6.2 ± 0.42 | |
| Claustrum | 5.55 ± 0.5 | |
| Epithalamus | 5.41 ± 0.38 | |
| Frontal Lobe | 5.27 ± 0.46 | |
| Globus Pallidus | 6.27 ± 0.66 | |
| Hypothalamus | 4.99 ± 0.35 | |
| Insula | 5.15 ± 0.48 | |
| Limbic Lobe | 5.4 ± 0.55 | |
| Mesencephalon | 5.58 ± 0.54 | |
| Myelencephalon | 5.52 ± 0.53 | |
| Occipital Lobe | 5.85 ± 0.51 | |
| Parietal Lobe | 5.47 ± 0.42 | |
| Pontine Tegmentum | 5.5 ± 0.45 | |
| Striatum | 5.45 ± 0.52 | |
| Subthalamus | 5.67 ± 0.33 | |
| Temporal Lobe | 5.45 ± 0.39 | |
| Thalamus | 5.56 ± 0.37 | |
| White Matter | 6.75 ± 0.43 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tsen54 | P | Pons | 8.24 | |
| 8.86 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| SEN54_HUMAN_1 | 16 | 1 | 16 | MEPDPEPAAVEVPAGR | PRIDE |