Annotation Detail for CCDC57
Basic Information Top
| Gene Symbol: | CCDC57 ( FLJ00130,FLJ23754,FLJ43953,MGC102869 ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 57 |
| Band: | 17q25.3 |
| Quick Links | Entrez ID:284001; OMIM: NA; Uniprot ID:CCD57_HUMAN; ENSEMBL ID: ENSG00000176155; HGNC ID: 27564 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.631724
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 20 / 564012 | 35 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 85 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 12 / 119369 | 100 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 14 / 136302 | 102 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 61 / 3360307 | 18 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 12 / 67052 | 178 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 12 / 96619 | 124 | |
| testis | 7 / 330442 | 21 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P896373
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.54 ± 0.42 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.32 ± 0.2 | |
| Basal Part of Pons | 8.24 ± 0.24 | |
| Cerebellar Cortex | 8.55 ± 0.37 | |
| Cerebellar Nuclei | 7.88 ± 0.41 | |
| Claustrum | 8.15 ± 0.32 | |
| Epithalamus | 8.91 ± 0.71 | |
| Frontal Lobe | 8.05 ± 0.38 | |
| Globus Pallidus | 7.46 ± 0.3 | |
| Hypothalamus | 8.01 ± 0.19 | |
| Insula | 8.24 ± 0.38 | |
| Limbic Lobe | 8.44 ± 0.5 | |
| Mesencephalon | 8.13 ± 0.35 | |
| Myelencephalon | 8.26 ± 0.45 | |
| Occipital Lobe | 8.76 ± 0.5 | |
| Parietal Lobe | 8.35 ± 0.3 | |
| Pontine Tegmentum | 8.13 ± 0.38 | |
| Striatum | 8.65 ± 0.37 | |
| Subthalamus | 7.94 ± 0.31 | |
| Temporal Lobe | 8.27 ± 0.34 | |
| Thalamus | 7.9 ± 0.23 | |
| White Matter | 7.01 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc57 | CB | Cerebellum | 0.51 | |
| 0.52 | | |||
| Ccdc57 | CTX | Cerebral cortex | 3.79 | |
| 2.25 | | |||
| Ccdc57 | HIP | Hippocampal region | 3.73 | |
| 2.95 | | |||
| Ccdc57 | HPF | Hippocampal formation | 4.2 | |
| 3.03 | | |||
| Ccdc57 | HY | Hypothalamus | 0.43 | |
| 0.27 | | |||
| Ccdc57 | LSX | Lateral septal complex | 0.25 | |
| 0.13 | | |||
| Ccdc57 | MB | Midbrain | 0.4 | |
| 0.43 | | |||
| Ccdc57 | MY | Medulla | 0.79 | |
| 0.66 | | |||
| Ccdc57 | OLF | Olfactory bulb | 13.6 | |
| 10.52 | | |||
| Ccdc57 | P | Pons | 0.25 | |
| 0.22 | | |||
| Ccdc57 | PAL | Pallidum | 0.28 | |
| 0.16 | | |||
| Ccdc57 | RHP | Retrohippocampal region | 5.67 | |
| 3.57 | | |||
| Ccdc57 | sAMY | Striatum-like amygdalar nuclei | 1.61 | |
| 0.98 | | |||
| Ccdc57 | STR | Striatum | 0.97 | |
| 0.62 | | |||
| Ccdc57 | STRd | Striatum dorsal region | 0.47 | |
| 0.34 | | |||
| Ccdc57 | STRv | Striatum ventral region | 2.84 | |
| 1.63 | | |||
| Ccdc57 | TH | Thalamus | 0.77 | |
| 0.77 | |