Annotation Detail for KCTD1
Basic Information Top
| Gene Symbol: | KCTD1 ( C18orf5 ) |
|---|---|
| Gene Full Name: | potassium channel tetramerisation domain containing 1 |
| Band: | 18q11.2 |
| Quick Links | Entrez ID:284252; OMIM: 613420; Uniprot ID:KCTD1_HUMAN; ENSEMBL ID: ENSG00000134504; HGNC ID: 18249 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.526630
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 97 / 3360307 | 28 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 5 / 89626 | 55 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 7 / 330442 | 21 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P130343
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.98 ± 0.62 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.61 ± 0.46 | |
| Basal Part of Pons | 9.38 ± 0.25 | |
| Cerebellar Cortex | 9.53 ± 0.11 | |
| Cerebellar Nuclei | 9.4 ± 0.58 | |
| Claustrum | 10.48 ± 0.29 | |
| Epithalamus | 10.06 ± 0.54 | |
| Frontal Lobe | 10 ± 0.48 | |
| Globus Pallidus | 8.19 ± 0.82 | |
| Hypothalamus | 9.19 ± 0.41 | |
| Insula | 10.05 ± 0.25 | |
| Limbic Lobe | 10.16 ± 0.79 | |
| Mesencephalon | 9.61 ± 0.38 | |
| Myelencephalon | 9.82 ± 0.5 | |
| Occipital Lobe | 10.17 ± 0.57 | |
| Parietal Lobe | 10.09 ± 0.5 | |
| Pontine Tegmentum | 9.96 ± 0.39 | |
| Striatum | 10.84 ± 0.33 | |
| Subthalamus | 9.33 ± 0.19 | |
| Temporal Lobe | 9.94 ± 0.42 | |
| Thalamus | 9.45 ± 0.34 | |
| White Matter | 7.96 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Kctd1 | CB | Cerebellum | 20.67 | |
| 57.09 | | |||
| Kctd1 | CTX | Cerebral cortex | 88.12 | |
| 90.15 | | |||
| Kctd1 | HIP | Hippocampal region | 35.45 | |
| 52.7 | | |||
| Kctd1 | HPF | Hippocampal formation | 30.92 | |
| 38.7 | | |||
| Kctd1 | HY | Hypothalamus | 3.04 | |
| 2.58 | | |||
| Kctd1 | LSX | Lateral septal complex | 10.34 | |
| 9.22 | | |||
| Kctd1 | MB | Midbrain | 7.23 | |
| 7 | | |||
| Kctd1 | MY | Medulla | 10.1 | |
| 11.71 | | |||
| Kctd1 | OLF | Olfactory bulb | 35.87 | |
| 43.08 | | |||
| Kctd1 | P | Pons | 7.89 | |
| 9.23 | | |||
| Kctd1 | PAL | Pallidum | 10.36 | |
| 9.88 | | |||
| Kctd1 | RHP | Retrohippocampal region | 24.75 | |
| 22.48 | | |||
| Kctd1 | sAMY | Striatum-like amygdalar nuclei | 10.48 | |
| 9.33 | | |||
| Kctd1 | STR | Striatum | 95.48 | |
| 90.05 | | |||
| Kctd1 | STRd | Striatum dorsal region | 100 | |
| 99.3 | | |||
| Kctd1 | STRv | Striatum ventral region | 100 | |
| 94.54 | | |||
| Kctd1 | TH | Thalamus | 10.39 | |
| 10.11 | |