Annotation Detail for SSC5D
Basic Information Top
| Gene Symbol: | SSC5D ( - ) |
|---|---|
| Gene Full Name: | - |
| Band: | 19q13.42 |
| Quick Links | Entrez ID:284297; OMIM: NA; Uniprot ID:B5MDQ5_HUMAN; ENSEMBL ID: ENSG00000179954; HGNC ID: 26641 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.554182
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 19 / 1939121 | 9 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 25 / 3360307 | 7 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 3 / 89626 | 33 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1124_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.74 ± 1.15 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.3 ± 0.33 | |
| Basal Part of Pons | 2.38 ± 0.56 | |
| Cerebellar Cortex | 2.07 ± 0.81 | |
| Cerebellar Nuclei | 2.61 ± 0.93 | |
| Claustrum | 2.94 ± 1.05 | |
| Epithalamus | 2.2 ± 0.64 | |
| Frontal Lobe | 2.16 ± 0.77 | |
| Globus Pallidus | 3.13 ± 0.53 | |
| Hypothalamus | 2.36 ± 0.89 | |
| Insula | 2.14 ± 0.73 | |
| Limbic Lobe | 2.32 ± 0.87 | |
| Mesencephalon | 2.49 ± 0.96 | |
| Myelencephalon | 2.35 ± 0.84 | |
| Occipital Lobe | 2.41 ± 0.85 | |
| Parietal Lobe | 2.37 ± 1.05 | |
| Pontine Tegmentum | 2.46 ± 0.91 | |
| Striatum | 3.09 ± 0.75 | |
| Subthalamus | 2.73 ± 0.76 | |
| Temporal Lobe | 2.21 ± 0.86 | |
| Thalamus | 2.39 ± 0.8 | |
| White Matter | 2.35 ± 0.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| A430110N23Rik | CB | Cerebellum | 0 | |
| 0 | | |||
| A430110N23Rik | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| A430110N23Rik | HIP | Hippocampal region | 0 | |
| 0 | | |||
| A430110N23Rik | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| A430110N23Rik | HY | Hypothalamus | 0 | |
| 0 | | |||
| A430110N23Rik | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| A430110N23Rik | MB | Midbrain | 0 | |
| 0 | | |||
| A430110N23Rik | MY | Medulla | 0 | |
| 0 | | |||
| A430110N23Rik | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| A430110N23Rik | P | Pons | 0 | |
| 0 | | |||
| A430110N23Rik | PAL | Pallidum | 0 | |
| 0 | | |||
| A430110N23Rik | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| A430110N23Rik | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| A430110N23Rik | STR | Striatum | 0 | |
| 0 | | |||
| A430110N23Rik | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| A430110N23Rik | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| A430110N23Rik | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00445967 | 15 | 1519 | 1533 | QALLLGLTQLVEAAR | Peptide Atlas |