Annotation Detail for EPHA6
Basic Information Top
| Gene Symbol: | EPHA6 ( DKFZp434C1418,EPA6,FLJ35246,PRO57066 ) |
|---|---|
| Gene Full Name: | EPH receptor A6 |
| Band: | 3q11.2 |
| Quick Links | Entrez ID:285220; OMIM: 600066; Uniprot ID:EPHA6_HUMAN; ENSEMBL ID: ENSG00000080224; HGNC ID: 19296 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.653244
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 5 / 1939121 | 2 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 30 / 3360307 | 8 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 |  |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_250_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.82 ± 0.72 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.41 ± 0.49 | |
| Basal Part of Pons | 6.67 ± 0.3 | |
| Cerebellar Cortex | 6.26 ± 0.58 | |
| Cerebellar Nuclei | 5.53 ± 0.92 | |
| Claustrum | 4.73 ± 0.62 | |
| Epithalamus | 4.63 ± 0.86 | |
| Frontal Lobe | 6.3 ± 0.62 | |
| Globus Pallidus | 4.49 ± 0.98 | |
| Hypothalamus | 5.49 ± 1.03 | |
| Insula | 6.44 ± 0.47 | |
| Limbic Lobe | 7.02 ± 0.45 | |
| Mesencephalon | 6.25 ± 0.74 | |
| Myelencephalon | 6.16 ± 0.79 | |
| Occipital Lobe | 6.13 ± 0.88 | |
| Parietal Lobe | 6.2 ± 0.66 | |
| Pontine Tegmentum | 6.11 ± 0.87 | |
| Striatum | 6.92 ± 0.45 | |
| Subthalamus | 5.66 ± 0.63 | |
| Temporal Lobe | 6.44 ± 0.64 | |
| Thalamus | 6.22 ± 0.57 | |
| White Matter | 3.33 ± 0.69 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Epha6 | CB | Cerebellum | 20.91 |  |
| 33.06 | | |||
| Epha6 | CTX | Cerebral cortex | 63.3 | |
| 60.69 | | |||
| Epha6 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Epha6 | HPF | Hippocampal formation | 98.99 | |
| 100 | | |||
| Epha6 | HY | Hypothalamus | 42.79 | |
| 37.56 | | |||
| Epha6 | LSX | Lateral septal complex | 69.61 | |
| 69.94 | | |||
| Epha6 | MB | Midbrain | 36.61 | |
| 36.4 | | |||
| Epha6 | MY | Medulla | 42.38 | |
| 48.44 | | |||
| Epha6 | OLF | Olfactory bulb | 88.77 | |
| 99.68 | | |||
| Epha6 | P | Pons | 36.64 | |
| 39.26 | | |||
| Epha6 | PAL | Pallidum | 58.25 | |
| 63.22 | | |||
| Epha6 | RHP | Retrohippocampal region | 91.11 | |
| 100 | | |||
| Epha6 | sAMY | Striatum-like amygdalar nuclei | 87.88 | |
| 79.44 | | |||
| Epha6 | STR | Striatum | 62.23 | |
| 51.68 | | |||
| Epha6 | STRd | Striatum dorsal region | 53.25 | |
| 41.98 | | |||
| Epha6 | STRv | Striatum ventral region | 75.21 | |
| 60.52 | | |||
| Epha6 | TH | Thalamus | 67.43 | |
| 72.3 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00096602 | 11 | 897 | 907 | NILVNSNLVCK | Peptide Atlas |