Annotation Detail for C3orf38
Basic Information Top
| Gene Symbol: | C3orf38 ( FLJ54270,MGC26717 ) |
|---|---|
| Gene Full Name: | chromosome 3 open reading frame 38 |
| Band: | 3p11.1 |
| Quick Links | Entrez ID:285237; OMIM: NA; Uniprot ID:CC038_HUMAN; ENSEMBL ID: ENSG00000179021; HGNC ID: 28384 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.518099
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 34 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 89 / 3360307 | 26 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 30 / 1100989 | 27 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 26 / 330442 | 78 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P32785
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.57 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.69 ± 0.29 | |
| Basal Part of Pons | 5.68 ± 0.3 | |
| Cerebellar Cortex | 5.82 ± 0.2 | |
| Cerebellar Nuclei | 5.33 ± 0.51 | |
| Claustrum | 5.65 ± 0.66 | |
| Epithalamus | 5.68 ± 0.34 | |
| Frontal Lobe | 5.61 ± 0.32 | |
| Globus Pallidus | 5.17 ± 0.34 | |
| Hypothalamus | 5.56 ± 0.34 | |
| Insula | 5.7 ± 0.39 | |
| Limbic Lobe | 5.57 ± 0.42 | |
| Mesencephalon | 5.53 ± 0.4 | |
| Myelencephalon | 5.57 ± 0.39 | |
| Occipital Lobe | 5.71 ± 0.3 | |
| Parietal Lobe | 5.62 ± 0.36 | |
| Pontine Tegmentum | 5.6 ± 0.36 | |
| Striatum | 5.53 ± 0.34 | |
| Subthalamus | 5.04 ± 0.57 | |
| Temporal Lobe | 5.61 ± 0.33 | |
| Thalamus | 5.59 ± 0.31 | |
| White Matter | 5.4 ± 0.3 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4930453N24Rik | CB | Cerebellum | 19.73 | |
| 27.09 | | |||
| 4930453N24Rik | CTX | Cerebral cortex | 24.75 | |
| 18.04 | | |||
| 4930453N24Rik | HIP | Hippocampal region | 28.92 | |
| 30.01 | | |||
| 4930453N24Rik | HPF | Hippocampal formation | 32.67 | |
| 29.97 | | |||
| 4930453N24Rik | HY | Hypothalamus | 18.06 | |
| 14.65 | | |||
| 4930453N24Rik | LSX | Lateral septal complex | 4.19 | |
| 3.16 | | |||
| 4930453N24Rik | MB | Midbrain | 8.42 | |
| 7.81 | | |||
| 4930453N24Rik | MY | Medulla | 25.07 | |
| 27.09 | | |||
| 4930453N24Rik | OLF | Olfactory bulb | 44.87 | |
| 34.21 | | |||
| 4930453N24Rik | P | Pons | 18.49 | |
| 19.6 | | |||
| 4930453N24Rik | PAL | Pallidum | 25.06 | |
| 22.34 | | |||
| 4930453N24Rik | RHP | Retrohippocampal region | 43.4 | |
| 32.41 | | |||
| 4930453N24Rik | sAMY | Striatum-like amygdalar nuclei | 32.69 | |
| 23.1 | | |||
| 4930453N24Rik | STR | Striatum | 22.55 | |
| 15.91 | | |||
| 4930453N24Rik | STRd | Striatum dorsal region | 19.11 | |
| 13.28 | | |||
| 4930453N24Rik | STRv | Striatum ventral region | 38.12 | |
| 26.36 | | |||
| 4930453N24Rik | TH | Thalamus | 21.09 | |
| 18.18 | |