Annotation Detail for RPUSD3
Basic Information Top
| Gene Symbol: | RPUSD3 ( FLJ34707,FLJ37268,MGC29784 ) |
|---|---|
| Gene Full Name: | RNA pseudouridylate synthase domain containing 3 |
| Band: | 3p25.3 |
| Quick Links | Entrez ID:285367; OMIM: NA; Uniprot ID:RUSD3_HUMAN; ENSEMBL ID: ENSG00000156990; HGNC ID: 28437 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.33719
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 64 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 99 / 3360307 | 29 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 10 / 46356 | 215 |  |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 3 / 29757 | 100 | |
| blood | 11 / 123478 | 89 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 15 / 211054 | 71 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 1 / 24145 | 41 | |
| liver | 5 / 207743 | 24 | |
| lung | 9 / 336974 | 26 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 10 / 210574 | 47 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 14 / 330442 | 42 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 0 / 51780 | 0 |
- Probe name: A_23_P255916
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.63 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.71 ± 0.48 | |
| Basal Part of Pons | 6.03 ± 0.61 | |
| Cerebellar Cortex | 6.45 ± 0.41 | |
| Cerebellar Nuclei | 5.54 ± 0.7 | |
| Claustrum | 5.17 ± 0.82 | |
| Epithalamus | 5.64 ± 0.69 | |
| Frontal Lobe | 5.99 ± 0.66 | |
| Globus Pallidus | 5.05 ± 0.4 | |
| Hypothalamus | 5.51 ± 0.76 | |
| Insula | 6.1 ± 0.23 | |
| Limbic Lobe | 5.79 ± 0.63 | |
| Mesencephalon | 5.77 ± 0.53 | |
| Myelencephalon | 5.83 ± 0.59 | |
| Occipital Lobe | 5.74 ± 0.39 | |
| Parietal Lobe | 5.8 ± 0.53 | |
| Pontine Tegmentum | 5.71 ± 0.69 | |
| Striatum | 5.27 ± 0.5 | |
| Subthalamus | 6.25 ± 0.17 | |
| Temporal Lobe | 6.13 ± 0.45 | |
| Thalamus | 5.89 ± 0.54 | |
| White Matter | 5.21 ± 0.57 | |
Mouse Brain ISH 