Annotation Detail for PRRT3
Basic Information Top
| Gene Symbol: | PRRT3 ( FLJ33674,MGC105134,MGC33990 ) |
|---|---|
| Gene Full Name: | proline-rich transmembrane protein 3 |
| Band: | 3p25.3 |
| Quick Links | Entrez ID:285368; OMIM: NA; Uniprot ID:PRRT3_HUMAN; ENSEMBL ID: ENSG00000163704; HGNC ID: 26591 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.598147
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 12 / 1939121 | 6 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 38 / 3360307 | 11 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 |  |
| ovary | 4 / 102051 | 39 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5374_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.82 ± 0.86 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.26 ± 0.3 | |
| Basal Part of Pons | 2.66 ± 0.88 | |
| Cerebellar Cortex | 3.02 ± 0.52 | |
| Cerebellar Nuclei | 2.74 ± 0.62 | |
| Claustrum | 2.93 ± 1.08 | |
| Epithalamus | 2.19 ± 0.72 | |
| Frontal Lobe | 2.54 ± 0.74 | |
| Globus Pallidus | 2.2 ± 0.9 | |
| Hypothalamus | 2.28 ± 0.65 | |
| Insula | 2.76 ± 0.57 | |
| Limbic Lobe | 2.58 ± 0.86 | |
| Mesencephalon | 2.62 ± 0.84 | |
| Myelencephalon | 2.6 ± 0.74 | |
| Occipital Lobe | 2.68 ± 0.72 | |
| Parietal Lobe | 2.73 ± 0.81 | |
| Pontine Tegmentum | 2.58 ± 0.62 | |
| Striatum | 2.25 ± 0.84 | |
| Subthalamus | 2.5 ± 0.56 | |
| Temporal Lobe | 2.58 ± 0.74 | |
| Thalamus | 2.45 ± 0.6 | |
| White Matter | 1.9 ± 0.9 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Prrt3 | CB | Cerebellum | 19.74 | |
| 31.7 | | |||
| Prrt3 | CTX | Cerebral cortex | 50 | |
| 42.81 | | |||
| Prrt3 | HIP | Hippocampal region | 26.76 | |
| 50 | | |||
| Prrt3 | HPF | Hippocampal formation | 34.02 | |
| 47.19 | | |||
| Prrt3 | HY | Hypothalamus | 6.49 | |
| 5.52 | | |||
| Prrt3 | LSX | Lateral septal complex | 2.13 | |
| 1.59 | | |||
| Prrt3 | MB | Midbrain | 16.96 | |
| 15.54 | | |||
| Prrt3 | MY | Medulla | 22.26 | |
| 27.13 | | |||
| Prrt3 | OLF | Olfactory bulb | 28.39 | |
| 24.11 | | |||
| Prrt3 | P | Pons | 19.62 | |
| 23.21 | | |||
| Prrt3 | PAL | Pallidum | 12.92 | |
| 12.11 | | |||
| Prrt3 | RHP | Retrohippocampal region | 50 | |
| 44.44 | | |||
| Prrt3 | sAMY | Striatum-like amygdalar nuclei | 11.9 | |
| 8.49 | | |||
| Prrt3 | STR | Striatum | 17.17 | |
| 12.28 | | |||
| Prrt3 | STRd | Striatum dorsal region | 19.63 | |
| 13.99 | | |||
| Prrt3 | STRv | Striatum ventral region | 18.56 | |
| 13.15 | | |||
| Prrt3 | TH | Thalamus | 26.28 | |
| 23.86 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00061065 | 24 | 77 | 100 | HAPAEEMPEKPVASPLGPALYGPK | Peptide Atlas |
| PRRT3_HUMAN_292 | 17 | 292 | 308 | AGAEVSWEVSSPGPPPK | PRIDE |
| PRRT3_HUMAN_309 | 8 | 309 | 316 | QADLPDAK | PRIDE |
| PRRT3_HUMAN_341 | 13 | 341 | 353 | AAMNGADPISPQR | PRIDE |
| PRRT3_HUMAN_49 | 18 | 49 | 66 | GSVGSEPQAFDVFPENPR | PRIDE |
| PRRT3_HUMAN_630 | 9 | 630 | 638 | GWDASPGPR | PRIDE |
| PRRT3_HUMAN_671 | 13 | 671 | 683 | FSWAWWGVHFWLR | PRIDE |
| PRRT3_HUMAN_882 | 28 | 882 | 909 | GPVPQHVVEAPDGAAAAASGSSLDSFSR | PRIDE |
| PRRT3_HUMAN_914 | 7 | 914 | 920 | ISWNPWR | PRIDE |
| PRRT3_HUMAN_966 | 7 | 966 | 972 | GKPGESR | PRIDE |