Annotation Detail for ATG9B
Basic Information Top
| Gene Symbol: | ATG9B ( APG9L2,NOS3AS,SONE ) |
|---|---|
| Gene Full Name: | ATG9 autophagy related 9 homolog B (S. cerevisiae) |
| Band: | 7q36.1 |
| Quick Links | Entrez ID:285973; OMIM: 612205; Uniprot ID:ATG9B_HUMAN; ENSEMBL ID: ENSG00000181652; HGNC ID: 21899 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.707300
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 43 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 52 / 3360307 | 15 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 6 / 1100989 | 5 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 5 / 336974 | 14 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 24 / 280825 | 85 |  |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 3 / 330442 | 9 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P379379
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.2 ± 0.9 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.86 ± 0.61 | |
| Basal Part of Pons | 1.5 ± 0.46 | |
| Cerebellar Cortex | 1.52 ± 0.72 | |
| Cerebellar Nuclei | 1.84 ± 0.61 | |
| Claustrum | 2.38 ± 0.98 | |
| Epithalamus | 1.37 ± 1.04 | |
| Frontal Lobe | 1.66 ± 0.8 | |
| Globus Pallidus | 1.96 ± 0.6 | |
| Hypothalamus | 1.52 ± 0.7 | |
| Insula | 1.65 ± 0.67 | |
| Limbic Lobe | 1.79 ± 0.75 | |
| Mesencephalon | 1.87 ± 0.66 | |
| Myelencephalon | 1.78 ± 0.8 | |
| Occipital Lobe | 1.81 ± 0.67 | |
| Parietal Lobe | 1.59 ± 0.81 | |
| Pontine Tegmentum | 1.68 ± 0.82 | |
| Striatum | 1.92 ± 0.78 | |
| Subthalamus | 1.65 ± 0.63 | |
| Temporal Lobe | 1.67 ± 0.72 | |
| Thalamus | 1.74 ± 0.72 | |
| White Matter | 2.75 ± 0.83 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nos3as | CB | Cerebellum | 40.43 | |
| 54.48 | | |||
| Nos3as | CTX | Cerebral cortex | 88.94 | |
| 83.59 | | |||
| Nos3as | HIP | Hippocampal region | 55.4 | |
| 81.25 | | |||
| Nos3as | HPF | Hippocampal formation | 55.94 | |
| 71.07 | | |||
| Nos3as | HY | Hypothalamus | 55.89 | |
| 50.66 | | |||
| Nos3as | LSX | Lateral septal complex | 84.66 | |
| 80.74 | | |||
| Nos3as | MB | Midbrain | 57.35 | |
| 56.77 | | |||
| Nos3as | MY | Medulla | 39.92 | |
| 46.37 | | |||
| Nos3as | OLF | Olfactory bulb | 86.44 | |
| 87.02 | | |||
| Nos3as | P | Pons | 53.75 | |
| 58.37 | | |||
| Nos3as | PAL | Pallidum | 52.17 | |
| 54.07 | | |||
| Nos3as | RHP | Retrohippocampal region | 54.68 | |
| 54.65 | | |||
| Nos3as | sAMY | Striatum-like amygdalar nuclei | 42.77 | |
| 33.18 | | |||
| Nos3as | STR | Striatum | 57.73 | |
| 49.12 | | |||
| Nos3as | STRd | Striatum dorsal region | 55.53 | |
| 46.88 | | |||
| Nos3as | STRv | Striatum ventral region | 65.99 | |
| 55.51 | | |||
| Nos3as | TH | Thalamus | 49.56 | |
| 49.94 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00430106 | 14 | 735 | 748 | VQQDAAAWGATSAR | Peptide Atlas |