Annotation Detail for NSMCE2
Basic Information Top
| Gene Symbol: | NSMCE2 ( C8orf36,FLJ32440,MMS21,NSE2 ) |
|---|---|
| Gene Full Name: | non-SMC element 2, MMS21 homolog (S. cerevisiae) |
| Band: | 8q24.13 |
| Quick Links | Entrez ID:286053; OMIM: NA; Uniprot ID:NSE2_HUMAN; ENSEMBL ID: ENSG00000156831; HGNC ID: 26513 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.388297
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 13 / 564012 | 23 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 47 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 66 / 3360307 | 19 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 9 / 336974 | 26 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 2 / 96619 | 20 | |
| testis | 7 / 330442 | 21 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8608_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.09 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.94 ± 0.2 | |
| Basal Part of Pons | 6.97 ± 0.28 | |
| Cerebellar Cortex | 6.87 ± 0.16 | |
| Cerebellar Nuclei | 7.09 ± 0.12 | |
| Claustrum | 7.25 ± 0.29 | |
| Epithalamus | 6.61 ± 0.33 | |
| Frontal Lobe | 6.94 ± 0.26 | |
| Globus Pallidus | 7.41 ± 0.18 | |
| Hypothalamus | 6.82 ± 0.28 | |
| Insula | 6.91 ± 0.2 | |
| Limbic Lobe | 6.91 ± 0.26 | |
| Mesencephalon | 7.01 ± 0.33 | |
| Myelencephalon | 6.99 ± 0.27 | |
| Occipital Lobe | 7.04 ± 0.27 | |
| Parietal Lobe | 7.01 ± 0.24 | |
| Pontine Tegmentum | 6.99 ± 0.23 | |
| Striatum | 7.01 ± 0.31 | |
| Subthalamus | 7.08 ± 0.22 | |
| Temporal Lobe | 6.97 ± 0.28 | |
| Thalamus | 7.14 ± 0.22 | |
| White Matter | 7.75 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nsmce2 | CB | Cerebellum | 40.91 | |
| 50.29 | | |||
| Nsmce2 | CTX | Cerebral cortex | 100 | |
| 72.79 | | |||
| Nsmce2 | HIP | Hippocampal region | 53.01 | |
| 56.54 | | |||
| Nsmce2 | HPF | Hippocampal formation | 68.99 | |
| 57.02 | | |||
| Nsmce2 | HY | Hypothalamus | 53.35 | |
| 29.21 | | |||
| Nsmce2 | LSX | Lateral septal complex | 43.53 | |
| 18.87 | | |||
| Nsmce2 | MB | Midbrain | 59.54 | |
| 37.6 | | |||
| Nsmce2 | MY | Medulla | 68.75 | |
| 52.78 | | |||
| Nsmce2 | OLF | Olfactory bulb | 90.27 | |
| 61.12 | | |||
| Nsmce2 | P | Pons | 64.52 | |
| 44.64 | | |||
| Nsmce2 | PAL | Pallidum | 62.89 | |
| 41.95 | | |||
| Nsmce2 | RHP | Retrohippocampal region | 98.72 | |
| 60.17 | | |||
| Nsmce2 | sAMY | Striatum-like amygdalar nuclei | 69.03 | |
| 32.97 | | |||
| Nsmce2 | STR | Striatum | 86.92 | |
| 48.26 | | |||
| Nsmce2 | STRd | Striatum dorsal region | 91.17 | |
| 52.05 | | |||
| Nsmce2 | STRv | Striatum ventral region | 100 | |
| 55.78 | | |||
| Nsmce2 | TH | Thalamus | 86.81 | |
| 61.22 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00011834 | 13 | 184 | 196 | VCGHTYEEDAIVR | Peptide Atlas |