Annotation Detail for SCARA5
Basic Information Top
| Gene Symbol: | SCARA5 ( FLJ23907,MGC45780,NET33,Tesr ) |
|---|---|
| Gene Full Name: | scavenger receptor class A, member 5 (putative) |
| Band: | 8p21.1 |
| Quick Links | Entrez ID:286133; OMIM: 611306; Uniprot ID:SCAR5_HUMAN; ENSEMBL ID: ENSG00000168079; HGNC ID: 28701 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591833
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 7 / 564012 | 12 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 30 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 7 / 103127 | 67 |  |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 121 / 97250 | 1244 |  |
| normal | 57 / 3360307 | 16 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 13 / 125191 | 103 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 123 / 149255 | 824 |  |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 13 / 107715 | 120 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 18 / 330442 | 54 | |
| thymus | 11 / 81131 | 135 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 77 / 52413 | 1469 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 17 / 232878 | 72 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P372386
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.07 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.29 ± 0.26 | |
| Basal Part of Pons | 5.25 ± 0.33 | |
| Cerebellar Cortex | 5.37 ± 0.41 | |
| Cerebellar Nuclei | 5.45 ± 0.58 | |
| Claustrum | 5.53 ± 0.51 | |
| Epithalamus | 4.63 ± 0.65 | |
| Frontal Lobe | 5.06 ± 0.58 | |
| Globus Pallidus | 5.5 ± 0.6 | |
| Hypothalamus | 4.59 ± 0.72 | |
| Insula | 4.97 ± 0.49 | |
| Limbic Lobe | 5.14 ± 0.57 | |
| Mesencephalon | 5.16 ± 0.45 | |
| Myelencephalon | 5.13 ± 0.58 | |
| Occipital Lobe | 5.21 ± 0.57 | |
| Parietal Lobe | 5.06 ± 0.59 | |
| Pontine Tegmentum | 5.01 ± 0.51 | |
| Striatum | 4.91 ± 0.47 | |
| Subthalamus | 4.59 ± 0.77 | |
| Temporal Lobe | 4.99 ± 0.56 | |
| Thalamus | 5.22 ± 0.42 | |
| White Matter | 5.78 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Scara5 | CB | Cerebellum | 0.84 | |
| 1.54 | | |||
| Scara5 | CTX | Cerebral cortex | 0.39 | |
| 0.45 | | |||
| Scara5 | HIP | Hippocampal region | 0.67 | |
| 1.01 | | |||
| Scara5 | HPF | Hippocampal formation | 0.6 | |
| 0.87 | | |||
| Scara5 | HY | Hypothalamus | 1.22 | |
| 2.03 | | |||
| Scara5 | LSX | Lateral septal complex | 1.02 | |
| 1.51 | | |||
| Scara5 | MB | Midbrain | 0.44 | |
| 0.61 | | |||
| Scara5 | MY | Medulla | 1.42 | |
| 2.4 | | |||
| Scara5 | OLF | Olfactory bulb | 4.83 | |
| 5.06 | | |||
| Scara5 | P | Pons | 1.37 | |
| 2.01 | | |||
| Scara5 | PAL | Pallidum | 0.98 | |
| 1.02 | | |||
| Scara5 | RHP | Retrohippocampal region | 0.38 | |
| 0.59 | | |||
| Scara5 | sAMY | Striatum-like amygdalar nuclei | 0.19 | |
| 0.33 | | |||
| Scara5 | STR | Striatum | 0.99 | |
| 1.12 | | |||
| Scara5 | STRd | Striatum dorsal region | 0.6 | |
| 0.66 | | |||
| Scara5 | STRv | Striatum ventral region | 3.2 | |
| 3.23 | | |||
| Scara5 | TH | Thalamus | 1.07 | |
| 0.89 | |