AutismKB 2.0

Annotation Detail for C9orf142


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Basic Information Top
Gene Symbol:C9orf142 ( - )
Gene Full Name: chromosome 9 open reading frame 142
Band: 9q34.3
Quick LinksEntrez ID:286257; OMIM: NA; Uniprot ID:CI142_HUMAN; ENSEMBL ID: ENSG00000148362; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst2 / 6231932
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult46 / 193912123
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor5 / 34366145
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor3 / 26384511
glioma2 / 10688318
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal78 / 336030723
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor3 / 12494924
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone3 / 7165541
bone marrow2 / 4880140
brain14 / 110098912
cervix5 / 48171103
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus1 / 2020949
eye6 / 21105428
heart1 / 8962611
intestine2 / 2344728
kidney2 / 2117779
larynx0 / 241450 
liver3 / 20774314
lung18 / 33697453
lymph0 / 442700 
lymph node1 / 9161010
mammary gland4 / 15327126
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary5 / 10205148
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate2 / 18934510
salivary gland0 / 201550 
skin5 / 21057423
spleen1 / 5395218
stomach0 / 966190 
testis3 / 3304429
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_48_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.62 ± 0.51
Basal Forebrain5.9 ± 0.33
Basal Part of Pons5.87 ± 0.55
Cerebellar Cortex6.02 ± 0.42
Cerebellar Nuclei5.61 ± 0.43
Claustrum4.88 ± 0.86
Epithalamus6.11 ± 0.64
Frontal Lobe5.73 ± 0.53
Globus Pallidus5.69 ± 0.15
Hypothalamus5.89 ± 0.46
Insula5.77 ± 0.39
Limbic Lobe5.52 ± 0.55
Mesencephalon5.65 ± 0.63
Myelencephalon5.73 ± 0.46
Occipital Lobe5.35 ± 0.47
Parietal Lobe5.54 ± 0.49
Pontine Tegmentum5.59 ± 0.52
Striatum5.57 ± 0.46
Subthalamus5.67 ± 0.5
Temporal Lobe5.81 ± 0.46
Thalamus5.7 ± 0.43
White Matter6.85 ± 0.3
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC029214CBCerebellum7.05
9.6
BC029214CTXCerebral cortex14.75
10.82
BC029214HIPHippocampal region9.72
9.13
BC029214HPFHippocampal formation10.19
9.29
BC029214HYHypothalamus4
3.2
BC029214LSXLateral septal complex8.97
6.2
BC029214MBMidbrain0.97
1.82
BC029214MYMedulla0.88
2.3
BC029214OLFOlfactory bulb6.79
5.04
BC029214PPons0.46
0.82
BC029214PALPallidum3.59
2.69
BC029214RHPRetrohippocampal region11.05
9.35
BC029214sAMYStriatum-like amygdalar nuclei2.35
1.92
BC029214STRStriatum4.61
3.47
BC029214STRdStriatum dorsal region4.87
3.92
BC029214STRvStriatum ventral region3.8
2.33
BC029214THThalamus30.24
26.59
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CI142_HUMAN_0 0 0 0 FGLSAAEDITPR PRIDE
CI142_HUMAN_0 0 0 0 LAAAEETAVSPR PRIDE
CI142_HUMAN_138 12 138 149 LAAAEETAVSPR PRIDE
CI142_HUMAN_19 15 19 33 FVCYCEGEESGEGDR PRIDE
CI142_HUMAN_191 13 191 203 SKKPAGGVDFDET PRIDE
CI142_HUMAN_63 12 63 74 FGLSAAEDITPR PRIDE
CI142_HUMAN_93 18 93 110 ASLTLSGGPSALAFDLSK PRIDE
CI142_HUMAN_93 27 93 119 ASLTLSGGPSALAFDLSKVPGPEAAPR PRIDE
PAp00009141 16 78 93 AACEQQAVALTLQEDR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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