Annotation Detail for TPRN
Basic Information Top
| Gene Symbol: | TPRN ( C9orf75,DFNB79,FLJ90254,MGC131933,RP11-350O14.7 ) |
|---|---|
| Gene Full Name: | taperin |
| Band: | 9q34.3 |
| Quick Links | Entrez ID:286262; OMIM: 613354; Uniprot ID:TPRN_HUMAN; ENSEMBL ID: ENSG00000176058; HGNC ID: 26894 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.323445
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 3 / 17475 | 171 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 10 / 263845 | 37 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 55 / 3360307 | 16 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 12 / 1100989 | 10 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 3 / 89626 | 33 | |
| intestine | 15 / 234472 | 63 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 4 / 336974 | 11 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 11 / 210574 | 52 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5793_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.72 ± 0.52 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.04 ± 0.39 | |
| Basal Part of Pons | 5.82 ± 0.49 | |
| Cerebellar Cortex | 6.32 ± 0.18 | |
| Cerebellar Nuclei | 6.07 ± 0.32 | |
| Claustrum | 6.14 ± 0.53 | |
| Epithalamus | 5.48 ± 0.34 | |
| Frontal Lobe | 5.82 ± 0.49 | |
| Globus Pallidus | 6.22 ± 0.69 | |
| Hypothalamus | 5.56 ± 0.5 | |
| Insula | 5.59 ± 0.42 | |
| Limbic Lobe | 5.96 ± 0.56 | |
| Mesencephalon | 5.91 ± 0.49 | |
| Myelencephalon | 5.9 ± 0.52 | |
| Occipital Lobe | 5.94 ± 0.49 | |
| Parietal Lobe | 5.84 ± 0.44 | |
| Pontine Tegmentum | 5.86 ± 0.39 | |
| Striatum | 5.8 ± 0.52 | |
| Subthalamus | 5.66 ± 0.21 | |
| Temporal Lobe | 5.81 ± 0.48 | |
| Thalamus | 5.92 ± 0.41 | |
| White Matter | 7 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| C430004E15Rik | CB | Cerebellum | 64.87 | |
| 83.16 | | |||
| C430004E15Rik | CTX | Cerebral cortex | 27.16 | |
| 18.15 | | |||
| C430004E15Rik | HIP | Hippocampal region | 21.26 | |
| 18.17 | | |||
| C430004E15Rik | HPF | Hippocampal formation | 21.37 | |
| 16.84 | | |||
| C430004E15Rik | HY | Hypothalamus | 24.46 | |
| 16.42 | | |||
| C430004E15Rik | LSX | Lateral septal complex | 29.4 | |
| 19.98 | | |||
| C430004E15Rik | MB | Midbrain | 37.56 | |
| 28.09 | | |||
| C430004E15Rik | MY | Medulla | 20.22 | |
| 16.98 | | |||
| C430004E15Rik | OLF | Olfactory bulb | 30.39 | |
| 20.72 | | |||
| C430004E15Rik | P | Pons | 41.86 | |
| 32.71 | | |||
| C430004E15Rik | PAL | Pallidum | 35.32 | |
| 27.31 | | |||
| C430004E15Rik | RHP | Retrohippocampal region | 20.86 | |
| 14.38 | | |||
| C430004E15Rik | sAMY | Striatum-like amygdalar nuclei | 15.46 | |
| 10.1 | | |||
| C430004E15Rik | STR | Striatum | 27.4 | |
| 18.82 | | |||
| C430004E15Rik | STRd | Striatum dorsal region | 31.96 | |
| 22.63 | | |||
| C430004E15Rik | STRv | Striatum ventral region | 19.33 | |
| 12.23 | | |||
| C430004E15Rik | TH | Thalamus | 37.92 | |
| 27.29 | |