Annotation Detail for ATP11C
Basic Information Top
| Gene Symbol: | ATP11C ( ATPIG,ATPIQ ) |
|---|---|
| Gene Full Name: | ATPase, class VI, type 11C |
| Band: | Xq27.1 |
| Quick Links | Entrez ID:286410; OMIM: 300516; Uniprot ID:AT11C_HUMAN; ENSEMBL ID: ENSG00000101974; HGNC ID: 13554 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.88252
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 21 / 564012 | 37 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 44 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 86 / 3360307 | 25 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P806749
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.9 ± 1 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.45 ± 0.18 | |
| Basal Part of Pons | 1.16 ± 0.37 | |
| Cerebellar Cortex | 1.28 ± 0.69 | |
| Cerebellar Nuclei | 1.72 ± 0.72 | |
| Claustrum | 2.32 ± 0.86 | |
| Epithalamus | 1.22 ± 0.68 | |
| Frontal Lobe | 1.29 ± 0.55 | |
| Globus Pallidus | 2.08 ± 0.35 | |
| Hypothalamus | 1.57 ± 0.69 | |
| Insula | 1.33 ± 0.47 | |
| Limbic Lobe | 1.47 ± 0.67 | |
| Mesencephalon | 1.61 ± 0.69 | |
| Myelencephalon | 1.49 ± 0.65 | |
| Occipital Lobe | 1.49 ± 0.58 | |
| Parietal Lobe | 1.45 ± 0.61 | |
| Pontine Tegmentum | 1.48 ± 0.65 | |
| Striatum | 1.58 ± 0.46 | |
| Subthalamus | 1.57 ± 0.59 | |
| Temporal Lobe | 1.38 ± 0.72 | |
| Thalamus | 1.43 ± 0.56 | |
| White Matter | 1.98 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Atp11c | CB | Cerebellum | 4.56 | |
| 5.78 | | |||
| Atp11c | CTX | Cerebral cortex | 5.24 | |
| 4.02 | | |||
| Atp11c | HIP | Hippocampal region | 7.6 | |
| 8.52 | | |||
| Atp11c | HPF | Hippocampal formation | 5.85 | |
| 5.79 | | |||
| Atp11c | HY | Hypothalamus | 4.11 | |
| 2.98 | | |||
| Atp11c | LSX | Lateral septal complex | 1.71 | |
| 1.26 | | |||
| Atp11c | MB | Midbrain | 7.9 | |
| 7.03 | | |||
| Atp11c | MY | Medulla | 14.95 | |
| 18.08 | | |||
| Atp11c | OLF | Olfactory bulb | 18.88 | |
| 17.41 | | |||
| Atp11c | P | Pons | 8.42 | |
| 9.04 | | |||
| Atp11c | PAL | Pallidum | 5.36 | |
| 4.18 | | |||
| Atp11c | RHP | Retrohippocampal region | 3.41 | |
| 2.52 | | |||
| Atp11c | sAMY | Striatum-like amygdalar nuclei | 5.12 | |
| 5.9 | | |||
| Atp11c | STR | Striatum | 6.42 | |
| 4.9 | | |||
| Atp11c | STRd | Striatum dorsal region | 5.45 | |
| 4.21 | | |||
| Atp11c | STRv | Striatum ventral region | 12.23 | |
| 7.45 | | |||
| Atp11c | TH | Thalamus | 26.16 | |
| 22.62 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| AT11C_HUMAN_328 | 8 | 328 | 335 | NQKTQKER | PRIDE |
| PAp00000161 | 14 | 210 | 223 | AAIECEQPQPDLYK | Peptide Atlas |