Annotation Detail for LIN9
Basic Information Top
| Gene Symbol: | LIN9 ( BARA,BARPsv,Lin-9,TGS,TGS1 ) |
|---|---|
| Gene Full Name: | lin-9 homolog (C. elegans) |
| Band: | 1q42.12 |
| Quick Links | Entrez ID:286826; OMIM: 609375; Uniprot ID:LIN9_HUMAN; ENSEMBL ID: ENSG00000183814; HGNC ID: 30830 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.120817
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 8 / 1939121 | 4 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 1 / 17290 | 57 |  |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 31 / 3360307 | 9 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P301995
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.55 ± 0.44 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.62 ± 0.23 | |
| Basal Part of Pons | 5.69 ± 0.35 | |
| Cerebellar Cortex | 5.64 ± 0.4 | |
| Cerebellar Nuclei | 5.74 ± 0.32 | |
| Claustrum | 5.81 ± 0.65 | |
| Epithalamus | 5.36 ± 0.44 | |
| Frontal Lobe | 5.47 ± 0.49 | |
| Globus Pallidus | 5.75 ± 0.29 | |
| Hypothalamus | 5.25 ± 0.38 | |
| Insula | 5.35 ± 0.27 | |
| Limbic Lobe | 5.61 ± 0.53 | |
| Mesencephalon | 5.58 ± 0.38 | |
| Myelencephalon | 5.62 ± 0.49 | |
| Occipital Lobe | 5.74 ± 0.5 | |
| Parietal Lobe | 5.6 ± 0.43 | |
| Pontine Tegmentum | 5.41 ± 0.51 | |
| Striatum | 5.58 ± 0.47 | |
| Subthalamus | 5.34 ± 0.59 | |
| Temporal Lobe | 5.47 ± 0.45 | |
| Thalamus | 5.59 ± 0.43 | |
| White Matter | 5.85 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lin9 | CB | Cerebellum | 34.71 | |
| 42.5 | | |||
| Lin9 | CTX | Cerebral cortex | 46.97 | |
| 34.71 | | |||
| Lin9 | HIP | Hippocampal region | 32.81 | |
| 37.18 | | |||
| Lin9 | HPF | Hippocampal formation | 35.25 | |
| 34.28 | | |||
| Lin9 | HY | Hypothalamus | 42.78 | |
| 34.48 | | |||
| Lin9 | LSX | Lateral septal complex | 45.84 | |
| 32.22 | | |||
| Lin9 | MB | Midbrain | 29.03 | |
| 25.88 | | |||
| Lin9 | MY | Medulla | 35.17 | |
| 37.2 | | |||
| Lin9 | OLF | Olfactory bulb | 45.54 | |
| 36.77 | | |||
| Lin9 | P | Pons | 26.7 | |
| 28.57 | | |||
| Lin9 | PAL | Pallidum | 26.82 | |
| 22.55 | | |||
| Lin9 | RHP | Retrohippocampal region | 40.52 | |
| 31.09 | | |||
| Lin9 | sAMY | Striatum-like amygdalar nuclei | 48.44 | |
| 34.51 | | |||
| Lin9 | STR | Striatum | 34.71 | |
| 24.38 | | |||
| Lin9 | STRd | Striatum dorsal region | 32.26 | |
| 22.98 | | |||
| Lin9 | STRv | Striatum ventral region | 31.22 | |
| 20.15 | | |||
| Lin9 | TH | Thalamus | 29.38 | |
| 23.97 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00433051 | 22 | 461 | 482 | HANSSTGQPCVENENLTDLISR | Peptide Atlas |