Annotation Detail for C11orf54
Basic Information Top
| Gene Symbol: | C11orf54 ( PTD012 ) |
|---|---|
| Gene Full Name: | chromosome 11 open reading frame 54 |
| Band: | 11q21 |
| Quick Links | Entrez ID:28970; OMIM: NA; Uniprot ID:CK054_HUMAN; ENSEMBL ID: ENSG00000182919; HGNC ID: 30204 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.8360
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 26 / 564012 | 46 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 71 / 1939121 | 36 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 152 / 3360307 | 45 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 52 / 211777 | 245 |  |
| larynx | 0 / 24145 | 0 | |
| liver | 13 / 207743 | 62 | |
| lung | 6 / 336974 | 17 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 7 / 330442 | 21 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P202750
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.72 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.93 ± 0.19 | |
| Basal Part of Pons | 7.43 ± 0.23 | |
| Cerebellar Cortex | 7.61 ± 0.18 | |
| Cerebellar Nuclei | 7.98 ± 0.4 | |
| Claustrum | 7.75 ± 0.23 | |
| Epithalamus | 8.12 ± 0.29 | |
| Frontal Lobe | 7.6 ± 0.27 | |
| Globus Pallidus | 8.59 ± 0.26 | |
| Hypothalamus | 7.88 ± 0.24 | |
| Insula | 7.62 ± 0.22 | |
| Limbic Lobe | 7.66 ± 0.34 | |
| Mesencephalon | 7.96 ± 0.24 | |
| Myelencephalon | 7.79 ± 0.34 | |
| Occipital Lobe | 8.03 ± 0.36 | |
| Parietal Lobe | 7.82 ± 0.29 | |
| Pontine Tegmentum | 7.82 ± 0.21 | |
| Striatum | 8.05 ± 0.27 | |
| Subthalamus | 7.91 ± 0.08 | |
| Temporal Lobe | 7.6 ± 0.23 | |
| Thalamus | 7.73 ± 0.24 | |
| White Matter | 8.99 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4931406C07Rik | CB | Cerebellum | 17.42 | |
| 20.4 | | |||
| 4931406C07Rik | CTX | Cerebral cortex | 56.05 | |
| 39.3 | | |||
| 4931406C07Rik | HIP | Hippocampal region | 39.88 | |
| 36.92 | | |||
| 4931406C07Rik | HPF | Hippocampal formation | 53.3 | |
| 45.37 | | |||
| 4931406C07Rik | HY | Hypothalamus | 2.24 | |
| 1.48 | | |||
| 4931406C07Rik | LSX | Lateral septal complex | 0.23 | |
| 0.15 | | |||
| 4931406C07Rik | MB | Midbrain | 4.77 | |
| 4.09 | | |||
| 4931406C07Rik | MY | Medulla | 4.87 | |
| 4.05 | | |||
| 4931406C07Rik | OLF | Olfactory bulb | 39.43 | |
| 30.59 | | |||
| 4931406C07Rik | P | Pons | 6.32 | |
| 6.55 | | |||
| 4931406C07Rik | PAL | Pallidum | 6.4 | |
| 5.12 | | |||
| 4931406C07Rik | RHP | Retrohippocampal region | 76.23 | |
| 57.8 | | |||
| 4931406C07Rik | sAMY | Striatum-like amygdalar nuclei | 46.29 | |
| 32.3 | | |||
| 4931406C07Rik | STR | Striatum | 33.43 | |
| 23.39 | | |||
| 4931406C07Rik | STRd | Striatum dorsal region | 44.44 | |
| 31.51 | | |||
| 4931406C07Rik | STRv | Striatum ventral region | 9.12 | |
| 6.45 | | |||
| 4931406C07Rik | TH | Thalamus | 8.01 | |
| 5.38 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000633 | 12 | 195 | 206 | APLVCLPVFVSR | Peptide Atlas |