AutismKB 2.0

Annotation Detail for C13orf15


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Basic Information Top
Gene Symbol:C13orf15 ( KIAA0564,MGC87338,RGC-32,RGC32,bA157L14.2 )
Gene Full Name: chromosome 13 open reading frame 15
Band: 13q14.11
Quick LinksEntrez ID:28984; OMIM: 610077; Uniprot ID:RGC32_HUMAN; ENSEMBL ID: ENSG00000102760; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus40 / 56401270
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult106 / 193912154
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma12 / 106883112
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia9 / 9584293
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia7 / 9725071
normal164 / 336030748
ovarian tumor4 / 7668252
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood16 / 123478129
bone6 / 7165583
bone marrow1 / 4880120
brain65 / 110098959
cervix1 / 4817120
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye3 / 21105414
heart1 / 8962611
intestine3 / 23447212
kidney9 / 21177742
larynx0 / 241450 
liver1 / 2077434
lung87 / 336974258
lymph0 / 442700 
lymph node5 / 9161054
mammary gland4 / 15327126
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary4 / 10205139
pancreas19 / 21481288
parathyroid4 / 20539194
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta24 / 28082585
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen2 / 5395237
stomach0 / 966190 
testis6 / 33044218
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218723_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.1
Adipocyte584.8
AdrenalCortex49.8
Adrenalgland50.45
Amygdala676.05
Appendix139.9
AtrioventricularNode327.6
BDCA4+_DentriticCells83.1
Bonemarrow478.95
BronchialEpithelialCells14
CD105+_Endothelial439.4
CD14+_Monocytes18.1
CD19+_BCells(neg._sel.)9.6
CD33+_Myeloid1291.05
CD34+109.65
CD4+_Tcells651
CD56+_NKCells9.45
CD71+_EarlyErythroid1943.05
CD8+_Tcells679.25
CardiacMyocytes12.45
Caudatenucleus344.95
Cerebellum698.55
CerebellumPeduncles430.7
CiliaryGanglion174.2
CingulateCortex321.05
Colorectaladenocarcinoma649.95
DorsalRootGanglion446.3
FetalThyroid511.05
Fetalbrain102
Fetalliver214.35
Fetallung1053.25
GlobusPallidus91.7
Heart435.55
Hypothalamus649.4
Kidney66.3
Leukemia_chronicMyelogenousK-5626.25
Leukemia_promyelocytic-HL-606.9
Leukemialymphoblastic(MOLT-4)9.4
Liver13.15
Lung4617.45
Lymphnode164.4
Lymphoma_burkitts(Daudi)513.6
Lymphoma_burkitts(Raji)8.7
MedullaOblongata358.6
OccipitalLobe485.15
OlfactoryBulb1415.8
Ovary5.4
Pancreas26.65
PancreaticIslet52.55
ParietalLobe427.95
Pituitary50.3
Placenta1760.95
Pons146.75
PrefrontalCortex929.85
Prostate219.3
Salivarygland237.05
SkeletalMuscle14.85
Skin61.1
SmoothMuscle7.5
Spinalcord394.25
SubthalamicNucleus129.05
SuperiorCervicalGanglion29
TemporalLobe131.55
Testis218.55
TestisGermCell69.4
TestisIntersitial108.2
TestisLeydigCell83.15
TestisSeminiferousTubule41.1
Thalamus469.9
Thymus448.3
Thyroid1262.2
Tongue11.3
Tonsil30.25
Trachea203.25
TrigeminalGanglion188.15
Uterus161.35
UterusCorpus23.8
WholeBlood99.05
Wholebrain1354.05
colon34.75
pineal_day53.86
pineal_night47.92
retina518.5
small_intestine161.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P20613
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.87 ± 1.01
Basal Forebrain1.37 ± 0.2
Basal Part of Pons1.69 ± 0.7
Cerebellar Cortex1.56 ± 0.77
Cerebellar Nuclei1.94 ± 0.87
Claustrum2.33 ± 0.69
Epithalamus1.58 ± 0.68
Frontal Lobe1.72 ± 0.72
Globus Pallidus2.24 ± 0.78
Hypothalamus1.86 ± 0.86
Insula1.24 ± 0.76
Limbic Lobe1.65 ± 0.82
Mesencephalon1.81 ± 0.73
Myelencephalon1.74 ± 0.74
Occipital Lobe1.95 ± 0.85
Parietal Lobe1.78 ± 0.73
Pontine Tegmentum1.86 ± 0.81
Striatum1.83 ± 0.88
Subthalamus1.8 ± 0.77
Temporal Lobe1.53 ± 0.78
Thalamus1.83 ± 0.62
White Matter3.62 ± 0.46
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1190002H23RikCBCerebellum2.46
3
1190002H23RikCTXCerebral cortex3.02
2.18
1190002H23RikHIPHippocampal region1.34
1.12
1190002H23RikHPFHippocampal formation1.5
1.18
1190002H23RikHYHypothalamus0.35
0.27
1190002H23RikLSXLateral septal complex3.77
3.52
1190002H23RikMBMidbrain1.1
1.16
1190002H23RikMYMedulla2.4
2.13
1190002H23RikOLFOlfactory bulb7.92
7.27
1190002H23RikPPons2.24
2.09
1190002H23RikPALPallidum1.25
0.95
1190002H23RikRHPRetrohippocampal region1.45
1
1190002H23RiksAMYStriatum-like amygdalar nuclei7.33
5
1190002H23RikSTRStriatum2.45
1.7
1190002H23RikSTRdStriatum dorsal region1.58
1.08
1190002H23RikSTRvStriatum ventral region2.29
1.35
1190002H23RikTHThalamus1.45
1.39
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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