AutismKB 2.0

Annotation Detail for ATAD2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:ATAD2 ( ANCCA,DKFZp667N1320,MGC131938,MGC142216,MGC29843,MGC5254,PRO2000 )
Gene Full Name: ATPase family, AAA domain containing 2
Band: 8q24.13
Quick LinksEntrez ID:29028; OMIM: 611941; Uniprot ID:ATAD2_HUMAN; ENSEMBL ID: ENSG00000156802; HGNC ID: 30123
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus22 / 56401239
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult60 / 193912130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor7 / 11424661
esophageal tumor3 / 17290173
gastrointestinal tumor11 / 11936992
germ cell tumor11 / 26384541
glioma4 / 10688337
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia8 / 9584283
liver tumor4 / 9635941
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal97 / 336030728
ovarian tumor4 / 7668252
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer6 / 10268058
retinoblastoma8 / 46356172
skin tumor3 / 12494924
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder1 / 2975733
blood1 / 1234788
bone3 / 7165541
bone marrow4 / 4880181
brain15 / 110098913
cervix4 / 4817183
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus3 / 20209148
eye8 / 21105437
heart1 / 8962611
intestine9 / 23447238
kidney6 / 21177728
larynx0 / 241450 
liver11 / 20774352
lung7 / 33697420
lymph0 / 442700 
lymph node17 / 91610185
mammary gland9 / 15327158
mouth3 / 6705244
muscle3 / 10771527
nerve0 / 157680 
ovary5 / 10205148
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta1 / 2808253
prostate5 / 18934526
salivary gland0 / 201550 
skin8 / 21057437
spleen2 / 5395237
stomach8 / 9661982
testis18 / 33044254
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218782_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts57.5
Adipocyte4.95
AdrenalCortex5.8
Adrenalgland4.4
Amygdala5.1
Appendix5.45
AtrioventricularNode5.4
BDCA4+_DentriticCells5.5
Bonemarrow5.15
BronchialEpithelialCells5.1
CD105+_Endothelial37.4
CD14+_Monocytes5.95
CD19+_BCells(neg._sel.)5.5
CD33+_Myeloid7.75
CD34+18.6
CD4+_Tcells5.8
CD56+_NKCells6.1
CD71+_EarlyErythroid75.5
CD8+_Tcells5.2
CardiacMyocytes7.9
Caudatenucleus4.6
Cerebellum4.25
CerebellumPeduncles6
CiliaryGanglion4
CingulateCortex5.35
Colorectaladenocarcinoma10.9
DorsalRootGanglion4.05
FetalThyroid5.3
Fetalbrain4.8
Fetalliver17.15
Fetallung4.25
GlobusPallidus4.4
Heart6.95
Hypothalamus5.4
Kidney4.2
Leukemia_chronicMyelogenousK-56219.85
Leukemia_promyelocytic-HL-6019.1
Leukemialymphoblastic(MOLT-4)64.9
Liver7
Lung5.55
Lymphnode4.25
Lymphoma_burkitts(Daudi)24.85
Lymphoma_burkitts(Raji)7.95
MedullaOblongata4.55
OccipitalLobe4.75
OlfactoryBulb4
Ovary3.45
Pancreas4.2
PancreaticIslet5.6
ParietalLobe5.7
Pituitary5.9
Placenta4.95
Pons5
PrefrontalCortex6.05
Prostate5.9
Salivarygland4.4
SkeletalMuscle7.85
Skin5.45
SmoothMuscle5.8
Spinalcord5.6
SubthalamicNucleus4.9
SuperiorCervicalGanglion6.75
TemporalLobe4.85
Testis5.95
TestisGermCell17
TestisIntersitial10.4
TestisLeydigCell18.75
TestisSeminiferousTubule5.45
Thalamus5.5
Thymus3.85
Thyroid6.2
Tongue5.65
Tonsil5.25
Trachea4.2
TrigeminalGanglion5.8
Uterus4.05
UterusCorpus4.95
WholeBlood5.55
Wholebrain4
colon5.2
pineal_day6.22
pineal_night6.16
retina6.125
small_intestine4.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P59596
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.39 ± 0.36
Basal Forebrain6.27 ± 0.22
Basal Part of Pons6.33 ± 0.45
Cerebellar Cortex5.79 ± 0.26
Cerebellar Nuclei5.7 ± 0.27
Claustrum6.61 ± 0.61
Epithalamus6.46 ± 0.29
Frontal Lobe6.06 ± 0.41
Globus Pallidus6.18 ± 0.37
Hypothalamus6.11 ± 0.36
Insula6.18 ± 0.33
Limbic Lobe6.19 ± 0.47
Mesencephalon6.17 ± 0.53
Myelencephalon6.26 ± 0.46
Occipital Lobe6.65 ± 0.49
Parietal Lobe6.39 ± 0.45
Pontine Tegmentum6.09 ± 0.39
Striatum6.6 ± 0.3
Subthalamus5.91 ± 0.62
Temporal Lobe6.18 ± 0.4
Thalamus6.7 ± 0.46
White Matter5.58 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Atad2CBCerebellum0.7
1.51
Atad2CTXCerebral cortex1.35
1.22
Atad2HIPHippocampal region0.73
0.77
Atad2HPFHippocampal formation0.59
0.68
Atad2HYHypothalamus0.08
0.1
Atad2LSXLateral septal complex0.39
0.44
Atad2MBMidbrain0.22
0.41
Atad2MYMedulla1.7
2.6
Atad2OLFOlfactory bulb0.66
1.27
Atad2PPons0.56
0.85
Atad2PALPallidum0.06
0.11
Atad2RHPRetrohippocampal region0.31
0.51
Atad2sAMYStriatum-like amygdalar nuclei0.07
0.07
Atad2STRStriatum0.36
0.34
Atad2STRdStriatum dorsal region0.44
0.41
Atad2STRvStriatum ventral region0.18
0.24
Atad2THThalamus0.15
0.24
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010173 12 462 473 GCLFYGPPGTGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved