AutismKB 2.0

Annotation Detail for ZC3H7A


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Basic Information Top
Gene Symbol:ZC3H7A ( FLJ10027,FLJ20318,ZC3H7,ZC3HDC7 )
Gene Full Name: zinc finger CCCH-type containing 7A
Band: 16p13.13
Quick LinksEntrez ID:29066; OMIM: NA; Uniprot ID:Z3H7A_HUMAN; ENSEMBL ID: ENSG00000122299; HGNC ID: 30959
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst1 / 6231916
fetus52 / 56401292
neonate2 / 3109764
infant1 / 2362042
juvenile4 / 5555671
adult110 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor6 / 26384522
glioma2 / 10688318
head and neck tumor11 / 13630280
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor1 / 9635910
lung tumor2 / 10312719
lymphoma4 / 7175555
non-neoplasia5 / 9725051
normal211 / 336030762
ovarian tumor3 / 7668239
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor9 / 12494972
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites2 / 4001549
bladder1 / 2975733
blood5 / 12347840
bone1 / 7165513
bone marrow0 / 488010 
brain40 / 110098936
cervix0 / 481710 
connective tissue8 / 14925553
ear2 / 16212123
embryonic tissue14 / 21572264
esophagus1 / 2020949
eye10 / 21105447
heart3 / 8962633
intestine6 / 23447225
kidney9 / 21177742
larynx6 / 24145248
liver2 / 2077439
lung20 / 33697459
lymph3 / 4427067
lymph node10 / 91610109
mammary gland7 / 15327145
mouth6 / 6705289
muscle4 / 10771537
nerve2 / 15768126
ovary3 / 10205129
pancreas14 / 21481265
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta12 / 28082542
prostate4 / 18934521
salivary gland0 / 201550 
skin16 / 21057475
spleen3 / 5395255
stomach2 / 9661920
testis8 / 33044224
thymus4 / 8113149
thyroid21 / 47473442
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus7 / 23287830
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218348_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts212.95
Adipocyte58.9
AdrenalCortex24.15
Adrenalgland18.05
Amygdala32.15
Appendix21.05
AtrioventricularNode16.9
BDCA4+_DentriticCells132.4
Bonemarrow23.05
BronchialEpithelialCells37.1
CD105+_Endothelial38.9
CD14+_Monocytes201.8
CD19+_BCells(neg._sel.)164.3
CD33+_Myeloid186.65
CD34+108.3
CD4+_Tcells119.55
CD56+_NKCells100.35
CD71+_EarlyErythroid37.9
CD8+_Tcells115.55
CardiacMyocytes94.45
Caudatenucleus20
Cerebellum19.35
CerebellumPeduncles21.25
CiliaryGanglion17.55
CingulateCortex25.15
Colorectaladenocarcinoma23.4
DorsalRootGanglion34.3
FetalThyroid42.45
Fetalbrain71.9
Fetalliver28.15
Fetallung57.4
GlobusPallidus14.5
Heart29.4
Hypothalamus54.1
Kidney24.95
Leukemia_chronicMyelogenousK-56265.4
Leukemia_promyelocytic-HL-6060.5
Leukemialymphoblastic(MOLT-4)66.45
Liver22.95
Lung17.6
Lymphnode130.45
Lymphoma_burkitts(Daudi)62.3
Lymphoma_burkitts(Raji)186.45
MedullaOblongata16.15
OccipitalLobe22.05
OlfactoryBulb39.65
Ovary38.55
Pancreas24.05
PancreaticIslet52.8
ParietalLobe17.2
Pituitary38.2
Placenta45.2
Pons19.6
PrefrontalCortex30.6
Prostate75.05
Salivarygland55
SkeletalMuscle49.5
Skin29
SmoothMuscle81.7
Spinalcord49.15
SubthalamicNucleus21.3
SuperiorCervicalGanglion23.75
TemporalLobe18.5
Testis10.1
TestisGermCell18.1
TestisIntersitial16.25
TestisLeydigCell14.15
TestisSeminiferousTubule15.7
Thalamus29
Thymus44.5
Thyroid104.15
Tongue21
Tonsil60.55
Trachea31.15
TrigeminalGanglion30.2
Uterus56.1
UterusCorpus18.95
WholeBlood102
Wholebrain21.2
colon59.1
pineal_day55.64
pineal_night35.66
retina67.475
small_intestine46.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P256668
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.5 ± 0.36
Basal Forebrain6.38 ± 0.16
Basal Part of Pons6.2 ± 0.37
Cerebellar Cortex6.75 ± 0.21
Cerebellar Nuclei6.24 ± 0.41
Claustrum6.33 ± 0.45
Epithalamus6.41 ± 0.21
Frontal Lobe6.3 ± 0.34
Globus Pallidus6.49 ± 0.31
Hypothalamus6.41 ± 0.43
Insula6.4 ± 0.34
Limbic Lobe6.54 ± 0.35
Mesencephalon6.54 ± 0.33
Myelencephalon6.41 ± 0.38
Occipital Lobe6.66 ± 0.3
Parietal Lobe6.38 ± 0.33
Pontine Tegmentum6.52 ± 0.41
Striatum6.5 ± 0.35
Subthalamus6.7 ± 0.29
Temporal Lobe6.5 ± 0.34
Thalamus6.33 ± 0.3
White Matter6.99 ± 0.17
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zc3h7aCBCerebellum0.44
0.63
Zc3h7aCTXCerebral cortex5.09
3.41
Zc3h7aHIPHippocampal region14.43
16.15
Zc3h7aHPFHippocampal formation9.9
10.03
Zc3h7aHYHypothalamus0.43
0.46
Zc3h7aLSXLateral septal complex0.99
0.65
Zc3h7aMBMidbrain0.21
0.48
Zc3h7aMYMedulla0
0
Zc3h7aOLFOlfactory bulb2.64
2.33
Zc3h7aPPons0.03
0.11
Zc3h7aPALPallidum0.87
0.57
Zc3h7aRHPRetrohippocampal region2.24
1.6
Zc3h7asAMYStriatum-like amygdalar nuclei0.08
0.04
Zc3h7aSTRStriatum0.59
0.39
Zc3h7aSTRdStriatum dorsal region0.65
0.46
Zc3h7aSTRvStriatum ventral region0.39
0.22
Zc3h7aTHThalamus1.62
1.42
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00026113 17 783 799 KCQYVGNCSFAHSPEER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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