AutismKB 2.0

Annotation Detail for CNIH4


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Basic Information Top
Gene Symbol:CNIH4 ( - )
Gene Full Name: cornichon homolog 4 (Drosophila)
Band: 1q42.11
Quick LinksEntrez ID:29097; OMIM: NA; Uniprot ID:CNIH4_HUMAN; ENSEMBL ID: ENSG00000143771; HGNC ID: 25013
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst5 / 6231980
fetus32 / 56401256
neonate1 / 3109732
infant1 / 2362042
juvenile0 / 555560 
adult103 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma1 / 1747557
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor16 / 26384560
glioma7 / 10688365
head and neck tumor7 / 13630251
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor3 / 9635931
lung tumor10 / 10312796
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal153 / 336030745
ovarian tumor7 / 7668291
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer11 / 102680107
retinoblastoma5 / 46356107
skin tumor3 / 12494924
soft tissue/muscle tissue tumor26 / 125191207
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland4 / 33197120
ascites0 / 400150 
bladder2 / 2975767
blood4 / 12347832
bone9 / 71655125
bone marrow1 / 4880120
brain42 / 110098938
cervix0 / 481710 
connective tissue22 / 149255147
ear0 / 162120 
embryonic tissue17 / 21572278
esophagus0 / 202090 
eye12 / 21105456
heart10 / 89626111
intestine13 / 23447255
kidney10 / 21177747
larynx3 / 24145124
liver7 / 20774333
lung23 / 33697468
lymph0 / 442700 
lymph node4 / 9161043
mammary gland6 / 15327139
mouth2 / 6705229
muscle5 / 10771546
nerve0 / 157680 
ovary8 / 10205178
pancreas5 / 21481223
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta12 / 28082542
prostate13 / 18934568
salivary gland0 / 201550 
skin11 / 21057452
spleen1 / 5395218
stomach2 / 9661920
testis15 / 33044245
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus15 / 23287864
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218728_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts77.15
Adipocyte124.65
AdrenalCortex47.3
Adrenalgland31.75
Amygdala13.95
Appendix36.05
AtrioventricularNode20.05
BDCA4+_DentriticCells29.45
Bonemarrow112.2
BronchialEpithelialCells648.95
CD105+_Endothelial75.5
CD14+_Monocytes184.45
CD19+_BCells(neg._sel.)37.85
CD33+_Myeloid220.55
CD34+57.75
CD4+_Tcells64.75
CD56+_NKCells181.7
CD71+_EarlyErythroid41.25
CD8+_Tcells67.6
CardiacMyocytes154.1
Caudatenucleus20.8
Cerebellum18.05
CerebellumPeduncles38.85
CiliaryGanglion38.45
CingulateCortex23.5
Colorectaladenocarcinoma77.4
DorsalRootGanglion26.25
FetalThyroid36.75
Fetalbrain27.35
Fetalliver33.7
Fetallung53.7
GlobusPallidus20.15
Heart53.45
Hypothalamus27.85
Kidney29.15
Leukemia_chronicMyelogenousK-562114.2
Leukemia_promyelocytic-HL-6045.05
Leukemialymphoblastic(MOLT-4)29.05
Liver40.45
Lung226.5
Lymphnode19.55
Lymphoma_burkitts(Daudi)36.85
Lymphoma_burkitts(Raji)46.25
MedullaOblongata17.1
OccipitalLobe18.75
OlfactoryBulb19.35
Ovary27.5
Pancreas24.6
PancreaticIslet64.35
ParietalLobe27.95
Pituitary26.95
Placenta72.45
Pons24.35
PrefrontalCortex22.9
Prostate40.65
Salivarygland21.8
SkeletalMuscle38.7
Skin44
SmoothMuscle124.45
Spinalcord26.1
SubthalamicNucleus25.2
SuperiorCervicalGanglion47.45
TemporalLobe23.3
Testis48.1
TestisGermCell35.95
TestisIntersitial23.85
TestisLeydigCell31.1
TestisSeminiferousTubule35.3
Thalamus23
Thymus38.6
Thyroid55.9
Tongue35.05
Tonsil29.15
Trachea29.6
TrigeminalGanglion45.85
Uterus61
UterusCorpus29.4
WholeBlood133.45
Wholebrain25.25
colon197.65
pineal_day84.04
pineal_night87.1
retina132.075
small_intestine226.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7237_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.94 ± 0.51
Basal Forebrain7.27 ± 0.16
Basal Part of Pons7.36 ± 0.22
Cerebellar Cortex7.14 ± 0.32
Cerebellar Nuclei7.58 ± 0.29
Claustrum6.75 ± 0.57
Epithalamus7.57 ± 0.21
Frontal Lobe7.36 ± 0.35
Globus Pallidus7.54 ± 0.36
Hypothalamus7.49 ± 0.37
Insula7.23 ± 0.18
Limbic Lobe7.01 ± 0.46
Mesencephalon7.18 ± 0.41
Myelencephalon7.22 ± 0.42
Occipital Lobe6.86 ± 0.41
Parietal Lobe7.21 ± 0.41
Pontine Tegmentum7.24 ± 0.35
Striatum7.22 ± 0.31
Subthalamus7.48 ± 0.38
Temporal Lobe7.23 ± 0.37
Thalamus7.15 ± 0.3
White Matter7.47 ± 0.39
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cnih4CBCerebellum21.54
24.17
Cnih4CTXCerebral cortex24.55
17.21
Cnih4HIPHippocampal region19.74
22.61
Cnih4HPFHippocampal formation17.63
17.65
Cnih4HYHypothalamus0.99
1.07
Cnih4LSXLateral septal complex7.16
7.15
Cnih4MBMidbrain4.19
4.17
Cnih4MYMedulla6.18
6.43
Cnih4OLFOlfactory bulb38.02
32.54
Cnih4PPons4.23
4.88
Cnih4PALPallidum4.62
4.33
Cnih4RHPRetrohippocampal region14.16
10.82
Cnih4sAMYStriatum-like amygdalar nuclei7.61
5.11
Cnih4STRStriatum13.68
10.55
Cnih4STRdStriatum dorsal region13.99
10.55
Cnih4STRvStriatum ventral region17.46
13.74
Cnih4THThalamus5.76
5.51
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CNIH4_HUMAN_85 20 85 104 YIMVPSGNMGVFDPTEIHNR PRIDE
PAp00039145 20 85 104 YIMVPSGNMGVFDPTEIHNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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