AutismKB 2.0

Annotation Detail for TMEM208


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Basic Information Top
Gene Symbol:TMEM208 ( - )
Gene Full Name: transmembrane protein 208
Band: 16q22.1
Quick LinksEntrez ID:29100; OMIM: NA; Uniprot ID:TM208_HUMAN; ENSEMBL ID: ENSG00000168701; HGNC ID: 25015
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus25 / 56401244
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult87 / 193912144
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma9 / 82823108
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor16 / 119369134
germ cell tumor3 / 26384511
glioma5 / 10688346
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor6 / 10312758
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal113 / 336030733
ovarian tumor7 / 7668291
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer10 / 10268097
retinoblastoma1 / 4635621
skin tumor8 / 12494964
soft tissue/muscle tissue tumor10 / 12519179
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites7 / 40015174
bladder0 / 297570 
blood4 / 12347832
bone4 / 7165555
bone marrow2 / 4880140
brain36 / 110098932
cervix0 / 481710 
connective tissue8 / 14925553
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye8 / 21105437
heart4 / 8962644
intestine16 / 23447268
kidney3 / 21177714
larynx0 / 241450 
liver3 / 20774314
lung20 / 33697459
lymph0 / 442700 
lymph node6 / 9161065
mammary gland3 / 15327119
mouth0 / 670520 
muscle9 / 10771583
nerve0 / 157680 
ovary7 / 10205168
pancreas16 / 21481274
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta14 / 28082549
prostate16 / 18934584
salivary gland0 / 201550 
skin11 / 21057452
spleen0 / 539520 
stomach1 / 9661910
testis4 / 33044212
thymus2 / 8113124
thyroid5 / 47473105
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221597_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts81.8
Adipocyte28.7
AdrenalCortex24
Adrenalgland26.2
Amygdala9.75
Appendix13.45
AtrioventricularNode6.25
BDCA4+_DentriticCells72.7
Bonemarrow7
BronchialEpithelialCells42.75
CD105+_Endothelial12.05
CD14+_Monocytes66.45
CD19+_BCells(neg._sel.)36.7
CD33+_Myeloid33.85
CD34+54.7
CD4+_Tcells12.2
CD56+_NKCells36.5
CD71+_EarlyErythroid5.9
CD8+_Tcells14.5
CardiacMyocytes25.8
Caudatenucleus9.8
Cerebellum6.7
CerebellumPeduncles13.4
CiliaryGanglion4.8
CingulateCortex10.2
Colorectaladenocarcinoma18.1
DorsalRootGanglion5.1
FetalThyroid20.85
Fetalbrain9.35
Fetalliver6.4
Fetallung12.5
GlobusPallidus6.65
Heart10.55
Hypothalamus23.8
Kidney14.6
Leukemia_chronicMyelogenousK-56216.45
Leukemia_promyelocytic-HL-6011.2
Leukemialymphoblastic(MOLT-4)19.55
Liver85.75
Lung34.3
Lymphnode9.6
Lymphoma_burkitts(Daudi)20.15
Lymphoma_burkitts(Raji)14.1
MedullaOblongata8.7
OccipitalLobe8.85
OlfactoryBulb8.3
Ovary6.05
Pancreas17.65
PancreaticIslet39.55
ParietalLobe7.2
Pituitary37.6
Placenta40.4
Pons8.5
PrefrontalCortex18.85
Prostate26.8
Salivarygland5.1
SkeletalMuscle7
Skin4.7
SmoothMuscle31.5
Spinalcord11.6
SubthalamicNucleus9
SuperiorCervicalGanglion6.9
TemporalLobe10.1
Testis19.5
TestisGermCell11.8
TestisIntersitial9.4
TestisLeydigCell6.9
TestisSeminiferousTubule11.45
Thalamus12.7
Thymus16.7
Thyroid31.15
Tongue6.5
Tonsil10.55
Trachea11.35
TrigeminalGanglion6.95
Uterus16
UterusCorpus6
WholeBlood11.9
Wholebrain52.5
colon18.5
pineal_day31.24
pineal_night30.12
retina21.375
small_intestine25.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4664_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.36 ± 0.77
Basal Forebrain7.82 ± 0.35
Basal Part of Pons8.18 ± 0.58
Cerebellar Cortex7.7 ± 0.54
Cerebellar Nuclei7.75 ± 0.64
Claustrum6.68 ± 1.04
Epithalamus8.21 ± 0.22
Frontal Lobe8.13 ± 0.52
Globus Pallidus7.7 ± 0.43
Hypothalamus8.44 ± 0.27
Insula8.11 ± 0.36
Limbic Lobe7.44 ± 0.91
Mesencephalon7.61 ± 0.71
Myelencephalon7.72 ± 0.73
Occipital Lobe6.88 ± 0.76
Parietal Lobe7.73 ± 0.64
Pontine Tegmentum7.8 ± 0.62
Striatum7.32 ± 0.57
Subthalamus8.28 ± 0.33
Temporal Lobe8.01 ± 0.59
Thalamus7.82 ± 0.55
White Matter7.44 ± 0.68
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Hspc171CBCerebellum7.32
7.59
Hspc171CTXCerebral cortex7.36
4.56
Hspc171HIPHippocampal region7.36
6.36
Hspc171HPFHippocampal formation6.63
5.19
Hspc171HYHypothalamus2.22
1.83
Hspc171LSXLateral septal complex1.42
0.93
Hspc171MBMidbrain3.61
3.35
Hspc171MYMedulla7.68
8.02
Hspc171OLFOlfactory bulb7.63
4.74
Hspc171PPons5.48
5.64
Hspc171PALPallidum2.87
2.21
Hspc171RHPRetrohippocampal region5.18
3.46
Hspc171sAMYStriatum-like amygdalar nuclei4.06
2.6
Hspc171STRStriatum2.23
1.47
Hspc171STRdStriatum dorsal region1.88
1.3
Hspc171STRvStriatum ventral region2.93
1.7
Hspc171THThalamus4.78
3.72
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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