Annotation Detail for UHRF1
Basic Information Top
| Gene Symbol: | UHRF1 ( FLJ21925,ICBP90,MGC138707,Np95,RNF106,hNP95 ) |
|---|---|
| Gene Full Name: | ubiquitin-like with PHD and ring finger domains 1 |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:29128; OMIM: 607990; Uniprot ID:UHRF1_HUMAN; ENSEMBL ID: ENSG00000034063; HGNC ID: 12556 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.108106
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 11 / 70761 | 155 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 19 / 564012 | 33 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 31 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 61 / 3360307 | 18 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 18 / 1100989 | 16 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 2 / 336974 | 5 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 13 / 91610 | 141 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 8 / 330442 | 24 | |
| thymus | 17 / 81131 | 209 |  |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P208880
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.66 ± 0.73 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.27 ± 0.89 | |
| Basal Part of Pons | 2.15 ± 0.69 | |
| Cerebellar Cortex | 3.75 ± 0.43 | |
| Cerebellar Nuclei | 2.81 ± 0.78 | |
| Claustrum | 2.87 ± 0.86 | |
| Epithalamus | 4.69 ± 0.62 | |
| Frontal Lobe | 2.74 ± 0.93 | |
| Globus Pallidus | 3.79 ± 0.97 | |
| Hypothalamus | 3.13 ± 0.5 | |
| Insula | 2.53 ± 0.78 | |
| Limbic Lobe | 2.42 ± 0.78 | |
| Mesencephalon | 3.2 ± 0.83 | |
| Myelencephalon | 3.03 ± 0.99 | |
| Occipital Lobe | 3.61 ± 0.86 | |
| Parietal Lobe | 2.94 ± 0.9 | |
| Pontine Tegmentum | 3.13 ± 0.76 | |
| Striatum | 3.01 ± 1.07 | |
| Subthalamus | 2.06 ± 0.7 | |
| Temporal Lobe | 2.55 ± 0.87 | |
| Thalamus | 3.65 ± 0.63 | |
| White Matter | 4.53 ± 0.65 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Uhrf1 | CB | Cerebellum | 0.15 | |
| 0.6 | | |||
| Uhrf1 | CTX | Cerebral cortex | 0.26 | |
| 0.45 | | |||
| Uhrf1 | HIP | Hippocampal region | 0.96 | |
| 1.65 | | |||
| Uhrf1 | HPF | Hippocampal formation | 0.75 | |
| 1.23 | | |||
| Uhrf1 | HY | Hypothalamus | 0.39 | |
| 0.55 | | |||
| Uhrf1 | LSX | Lateral septal complex | 0.98 | |
| 1.34 | | |||
| Uhrf1 | MB | Midbrain | 0.12 | |
| 0.43 | | |||
| Uhrf1 | MY | Medulla | 0.23 | |
| 0.44 | | |||
| Uhrf1 | OLF | Olfactory bulb | 1.6 | |
| 2.01 | | |||
| Uhrf1 | P | Pons | 0.3 | |
| 1.36 | | |||
| Uhrf1 | PAL | Pallidum | 0.26 | |
| 1.03 | | |||
| Uhrf1 | RHP | Retrohippocampal region | 0.29 | |
| 0.47 | | |||
| Uhrf1 | sAMY | Striatum-like amygdalar nuclei | 5.06 | |
| 7.53 | | |||
| Uhrf1 | STR | Striatum | 1.87 | |
| 3.39 | | |||
| Uhrf1 | STRd | Striatum dorsal region | 0.86 | |
| 1.55 | | |||
| Uhrf1 | STRv | Striatum ventral region | 2.76 | |
| 5.07 | | |||
| Uhrf1 | TH | Thalamus | 0.31 | |
| 0.45 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00009262 | 19 | 507 | 525 | ALALNCFAPINDQEGAEAK | Peptide Atlas |