AutismKB 2.0

Annotation Detail for GRSF1


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Basic Information Top
Gene Symbol:GRSF1 ( FLJ13125 )
Gene Full Name: G-rich RNA sequence binding factor 1
Band: 4q13.3
Quick LinksEntrez ID:2926; OMIM: 604851; Uniprot ID:GRSF1_HUMAN; ENSEMBL ID: ENSG00000132463; HGNC ID: 4610
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body9 / 70761127
blastocyst4 / 6231964
fetus68 / 564012120
neonate2 / 3109764
infant1 / 2362042
juvenile7 / 55556125
adult191 / 193912198
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma3 / 17475171
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma11 / 82823132
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor11 / 11936992
germ cell tumor28 / 263845106
glioma8 / 10688374
head and neck tumor8 / 13630258
kidney tumor4 / 6895958
leukemia22 / 95842229
liver tumor10 / 96359103
lung tumor7 / 10312767
lymphoma12 / 71755167
non-neoplasia10 / 97250102
normal356 / 3360307105
ovarian tumor12 / 76682156
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer12 / 102680116
retinoblastoma4 / 4635686
skin tumor12 / 12494996
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor18 / 90257199
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites7 / 40015174
bladder3 / 29757100
blood10 / 12347880
bone10 / 71655139
bone marrow9 / 48801184
brain110 / 110098999
cervix1 / 4817120
connective tissue11 / 14925573
ear2 / 16212123
embryonic tissue19 / 21572288
esophagus0 / 202090 
eye41 / 211054194
heart18 / 89626200
intestine25 / 234472106
kidney29 / 211777136
larynx0 / 241450 
liver17 / 20774381
lung42 / 336974124
lymph11 / 44270248
lymph node21 / 91610229
mammary gland8 / 15327152
mouth0 / 670520 
muscle7 / 10771564
nerve1 / 1576863
ovary18 / 102051176
pancreas25 / 214812116
parathyroid5 / 20539243
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta22 / 28082578
prostate21 / 189345110
salivary gland1 / 2015549
skin24 / 210574113
spleen3 / 5395255
stomach5 / 9661951
testis37 / 330442111
thymus5 / 8113161
thyroid8 / 47473168
tonsil3 / 16999176
trachea2 / 5241338
umbilical cord1 / 1368073
uterus30 / 232878128
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201501_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts83.75
Adipocyte24.5
AdrenalCortex20.4
Adrenalgland23.05
Amygdala114.4
Appendix21.1
AtrioventricularNode15.9
BDCA4+_DentriticCells110.6
Bonemarrow15.9
BronchialEpithelialCells60.85
CD105+_Endothelial18.05
CD14+_Monocytes42.8
CD19+_BCells(neg._sel.)35
CD33+_Myeloid46.05
CD34+79.95
CD4+_Tcells26.7
CD56+_NKCells60.5
CD71+_EarlyErythroid12.35
CD8+_Tcells25.8
CardiacMyocytes23.65
Caudatenucleus28.5
Cerebellum13.25
CerebellumPeduncles22.15
CiliaryGanglion13.1
CingulateCortex33.45
Colorectaladenocarcinoma18.05
DorsalRootGanglion20.3
FetalThyroid18.9
Fetalbrain32.25
Fetalliver12.5
Fetallung16.65
GlobusPallidus30.05
Heart15.65
Hypothalamus112.2
Kidney15.9
Leukemia_chronicMyelogenousK-56215.35
Leukemia_promyelocytic-HL-6038.9
Leukemialymphoblastic(MOLT-4)36.4
Liver19.3
Lung12.7
Lymphnode18.2
Lymphoma_burkitts(Daudi)45.5
Lymphoma_burkitts(Raji)27.1
MedullaOblongata26.6
OccipitalLobe52.55
OlfactoryBulb21.65
Ovary14.2
Pancreas15.05
PancreaticIslet29.2
ParietalLobe42.25
Pituitary43.85
Placenta21
Pons23.9
PrefrontalCortex118.35
Prostate38.5
Salivarygland18.25
SkeletalMuscle23.1
Skin13.6
SmoothMuscle31.35
Spinalcord54.55
SubthalamicNucleus29.1
SuperiorCervicalGanglion26.75
TemporalLobe24.65
Testis13.9
TestisGermCell22.65
TestisIntersitial14.8
TestisLeydigCell15.15
TestisSeminiferousTubule15.35
Thalamus51.95
Thymus35.55
Thyroid69.15
Tongue14.85
Tonsil19.4
Trachea14.4
TrigeminalGanglion25.25
Uterus19.85
UterusCorpus13.65
WholeBlood21.4
Wholebrain63.95
colon89.65
pineal_day76.48
pineal_night80.06
retina42.625
small_intestine56.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1712_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.99 ± 0.34
Basal Forebrain9.01 ± 0.16
Basal Part of Pons9.4 ± 0.08
Cerebellar Cortex8.93 ± 0.23
Cerebellar Nuclei9.6 ± 0.32
Claustrum9.11 ± 0.25
Epithalamus9.77 ± 0.3
Frontal Lobe9.28 ± 0.3
Globus Pallidus9.5 ± 0.25
Hypothalamus9.42 ± 0.19
Insula9.1 ± 0.36
Limbic Lobe9.24 ± 0.45
Mesencephalon9.2 ± 0.39
Myelencephalon9.16 ± 0.4
Occipital Lobe8.91 ± 0.41
Parietal Lobe9.31 ± 0.31
Pontine Tegmentum9.21 ± 0.32
Striatum8.87 ± 0.38
Subthalamus9.68 ± 0.12
Temporal Lobe9.26 ± 0.29
Thalamus9.06 ± 0.2
White Matter9.38 ± 0.44
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Grsf1CBCerebellum24.61
48.23
Grsf1CTXCerebral cortex36.61
31.64
Grsf1HIPHippocampal region24.89
34.33
Grsf1HPFHippocampal formation21.85
26.27
Grsf1HYHypothalamus13.34
12.72
Grsf1LSXLateral septal complex9.11
6.64
Grsf1MBMidbrain21.07
26.17
Grsf1MYMedulla31.54
48.27
Grsf1OLFOlfactory bulb27.96
26.2
Grsf1PPons27.29
38.52
Grsf1PALPallidum20.96
26.76
Grsf1RHPRetrohippocampal region17.39
15.88
Grsf1sAMYStriatum-like amygdalar nuclei14.14
12.07
Grsf1STRStriatum11.26
9.45
Grsf1STRdStriatum dorsal region11.08
9.24
Grsf1STRvStriatum ventral region10.39
9.03
Grsf1THThalamus34.81
42.09
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
GRSF1_HUMAN_373 22 373 394 GLPFQANAQDIINFFAPLKPVR PRIDE
GRSF1_HUMAN_406 21 406 426 ATGEADVHFETHEDAVAAMLK PRIDE
GRSF1_HUMAN_48 12 48 59 QSLAAAAAVPTR PRIDE
PAp00029927 22 407 428 GLPFQANAQDIINFFAPLKPVR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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