Annotation Detail for NCAPH2
Basic Information Top
Gene Symbol: | NCAPH2 ( CAPH2,MGC15858,MGC18000,MGC2455,MGC4133,MGC5305,MGC8640 ) |
---|---|
Gene Full Name: | non-SMC condensin II complex, subunit H2 |
Band: | 22q13.33 |
Quick Links | Entrez ID:29781; OMIM: 611230; Uniprot ID:CNDH2_HUMAN; ENSEMBL ID: ENSG00000025770; HGNC ID: 25071 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.180903
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 9 / 70761 | 127 | |
blastocyst | 5 / 62319 | 80 | |
fetus | 44 / 564012 | 78 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 7 / 55556 | 125 | |
adult | 113 / 1939121 | 58 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 1 / 12794 | 78 | |
bladder carcinoma | 2 / 17475 | 114 | |
breast (mammary gland) tumor | 5 / 94178 | 53 | |
cervical tumor | 4 / 34366 | 116 | |
chondrosarcoma | 6 / 82823 | 72 | |
colorectal tumor | 5 / 114246 | 43 | |
esophageal tumor | 1 / 17290 | 57 | |
gastrointestinal tumor | 13 / 119369 | 108 | |
germ cell tumor | 21 / 263845 | 79 | |
glioma | 22 / 106883 | 205 | |
head and neck tumor | 7 / 136302 | 51 | |
kidney tumor | 7 / 68959 | 101 | |
leukemia | 11 / 95842 | 114 | |
liver tumor | 23 / 96359 | 238 | |
lung tumor | 19 / 103127 | 184 | |
lymphoma | 24 / 71755 | 334 | |
non-neoplasia | 2 / 97250 | 20 | |
normal | 188 / 3360307 | 55 | |
ovarian tumor | 2 / 76682 | 26 | |
pancreatic tumor | 6 / 104616 | 57 | |
primitive neuroectodermal tumor of the CNS | 62 / 125680 | 493 | |
prostate cancer | 2 / 102680 | 19 | |
retinoblastoma | 7 / 46356 | 151 | |
skin tumor | 33 / 124949 | 264 | |
soft tissue/muscle tissue tumor | 25 / 125191 | 199 | |
uterine tumor | 7 / 90257 | 77 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 3 / 13106 | 228 | |
adrenal gland | 1 / 33197 | 30 | |
ascites | 6 / 40015 | 149 | |
bladder | 2 / 29757 | 67 | |
blood | 13 / 123478 | 105 | |
bone | 5 / 71655 | 69 | |
bone marrow | 1 / 48801 | 20 | |
brain | 73 / 1100989 | 66 | |
cervix | 8 / 48171 | 166 | |
connective tissue | 2 / 149255 | 13 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 16 / 215722 | 74 | |
esophagus | 1 / 20209 | 49 | |
eye | 36 / 211054 | 170 | |
heart | 1 / 89626 | 11 | |
intestine | 13 / 234472 | 55 | |
kidney | 7 / 211777 | 33 | |
larynx | 0 / 24145 | 0 | |
liver | 25 / 207743 | 120 | |
lung | 27 / 336974 | 80 | |
lymph | 3 / 44270 | 67 | |
lymph node | 3 / 91610 | 32 | |
mammary gland | 7 / 153271 | 45 | |
mouth | 3 / 67052 | 44 | |
muscle | 9 / 107715 | 83 | |
nerve | 3 / 15768 | 190 | |
ovary | 7 / 102051 | 68 | |
pancreas | 7 / 214812 | 32 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 19 / 280825 | 67 | |
prostate | 6 / 189345 | 31 | |
salivary gland | 3 / 20155 | 148 | |
skin | 33 / 210574 | 156 | |
spleen | 1 / 53952 | 18 | |
stomach | 5 / 96619 | 51 | |
testis | 14 / 330442 | 42 | |
thymus | 0 / 81131 | 0 | |
thyroid | 2 / 47473 | 42 | |
tonsil | 1 / 16999 | 58 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 24 / 232878 | 103 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 209718_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 47.45 | |
Adipocyte | 41.8 | |
AdrenalCortex | 45.8 | |
Adrenalgland | 33.2 | |
Amygdala | 33.75 | |
Appendix | 30.8 | |
AtrioventricularNode | 65.9 | |
BDCA4+_DentriticCells | 43.3 | |
Bonemarrow | 39.3 | |
BronchialEpithelialCells | 16.2 | |
CD105+_Endothelial | 39 | |
CD14+_Monocytes | 38.6 | |
CD19+_BCells(neg._sel.) | 51.75 | |
CD33+_Myeloid | 45.65 | |
CD34+ | 60.7 | |
CD4+_Tcells | 64.45 | |
CD56+_NKCells | 44.9 | |
CD71+_EarlyErythroid | 106.4 | |
CD8+_Tcells | 45.6 | |
CardiacMyocytes | 35.45 | |
Caudatenucleus | 35.9 | |
Cerebellum | 31.05 | |
CerebellumPeduncles | 65.85 | |
CiliaryGanglion | 39.3 | |
CingulateCortex | 52.25 | |
Colorectaladenocarcinoma | 26.6 | |
DorsalRootGanglion | 35.05 | |
FetalThyroid | 36.9 | |
Fetalbrain | 42.85 | |
Fetalliver | 28.3 | |
Fetallung | 24.4 | |
GlobusPallidus | 60.55 | |
Heart | 55.75 | |
Hypothalamus | 49.95 | |
Kidney | 29.15 | |
Leukemia_chronicMyelogenousK-562 | 37.5 | |
Leukemia_promyelocytic-HL-60 | 38 | |
Leukemialymphoblastic(MOLT-4) | 46.95 | |
Liver | 51.1 | |
Lung | 43.9 | |
Lymphnode | 31.95 | |
Lymphoma_burkitts(Daudi) | 51.4 | |
Lymphoma_burkitts(Raji) | 53.45 | |
MedullaOblongata | 27.85 | |
OccipitalLobe | 34.15 | |
OlfactoryBulb | 30.8 | |
Ovary | 28.25 | |
Pancreas | 37.1 | |
PancreaticIslet | 41.8 | |
ParietalLobe | 40.85 | |
Pituitary | 45.3 | |
Placenta | 37.45 | |
Pons | 35.95 | |
PrefrontalCortex | 44.6 | |
Prostate | 51.9 | |
Salivarygland | 38 | |
SkeletalMuscle | 55.95 | |
Skin | 33.45 | |
SmoothMuscle | 43.35 | |
Spinalcord | 47.6 | |
SubthalamicNucleus | 68.4 | |
SuperiorCervicalGanglion | 41.25 | |
TemporalLobe | 38.7 | |
Testis | 29.1 | |
TestisGermCell | 31.15 | |
TestisIntersitial | 51.05 | |
TestisLeydigCell | 36.45 | |
TestisSeminiferousTubule | 52 | |
Thalamus | 39.8 | |
Thymus | 28.15 | |
Thyroid | 31.55 | |
Tongue | 37.8 | |
Tonsil | 41.1 | |
Trachea | 34.6 | |
TrigeminalGanglion | 34.7 | |
Uterus | 39.3 | |
UterusCorpus | 26.85 | |
WholeBlood | 26.8 | |
Wholebrain | 21.8 | |
colon | 18.3 | |
pineal_day | 62.04 | |
pineal_night | 49.72 | |
retina | 42.25 | |
small_intestine | 14.25 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_5414_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 3.68 ± 0.73 | |
Basal Forebrain | 3.23 ± 0.51 | |
Basal Part of Pons | 3.51 ± 0.66 | |
Cerebellar Cortex | 3.85 ± 0.37 | |
Cerebellar Nuclei | 3.17 ± 0.5 | |
Claustrum | 3.82 ± 0.75 | |
Epithalamus | 3.24 ± 0.58 | |
Frontal Lobe | 3.47 ± 0.54 | |
Globus Pallidus | 2.92 ± 0.53 | |
Hypothalamus | 3.55 ± 0.62 | |
Insula | 3.29 ± 0.49 | |
Limbic Lobe | 3.4 ± 0.49 | |
Mesencephalon | 3.54 ± 0.62 | |
Myelencephalon | 3.41 ± 0.53 | |
Occipital Lobe | 3.21 ± 0.43 | |
Parietal Lobe | 3.31 ± 0.55 | |
Pontine Tegmentum | 3.38 ± 0.62 | |
Striatum | 2.89 ± 0.66 | |
Subthalamus | 3.22 ± 0.73 | |
Temporal Lobe | 3.58 ± 0.47 | |
Thalamus | 3.34 ± 0.5 | |
White Matter | 3.6 ± 0.71 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
D15Ertd785e | CB | Cerebellum | 51.06 | |
86.04 | ||||
D15Ertd785e | CTX | Cerebral cortex | 100 | |
100 | ||||
D15Ertd785e | HIP | Hippocampal region | 98.37 | |
100 | ||||
D15Ertd785e | HPF | Hippocampal formation | 100 | |
100 | ||||
D15Ertd785e | HY | Hypothalamus | 92.79 | |
89.65 | ||||
D15Ertd785e | LSX | Lateral septal complex | 66.65 | |
66.4 | ||||
D15Ertd785e | MB | Midbrain | 88.51 | |
91.24 | ||||
D15Ertd785e | MY | Medulla | 77 | |
92.55 | ||||
D15Ertd785e | OLF | Olfactory bulb | 91.41 | |
96.66 | ||||
D15Ertd785e | P | Pons | 83.52 | |
94.69 | ||||
D15Ertd785e | PAL | Pallidum | 82.84 | |
88.31 | ||||
D15Ertd785e | RHP | Retrohippocampal region | 100 | |
100 | ||||
D15Ertd785e | sAMY | Striatum-like amygdalar nuclei | 100 | |
98.06 | ||||
D15Ertd785e | STR | Striatum | 77.13 | |
74.09 | ||||
D15Ertd785e | STRd | Striatum dorsal region | 72.73 | |
69.73 | ||||
D15Ertd785e | STRv | Striatum ventral region | 85.36 | |
79.67 | ||||
D15Ertd785e | TH | Thalamus | 88.14 | |
87.44 |