AutismKB 2.0

Annotation Detail for UBN1


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Basic Information Top
Gene Symbol:UBN1 ( VT,VT4 )
Gene Full Name: ubinuclein 1
Band: 16p13.3
Quick LinksEntrez ID:29855; OMIM: 609771; Uniprot ID:UBN1_HUMAN; ENSEMBL ID: ENSG00000118900; HGNC ID: 12506
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst3 / 6231948
fetus44 / 56401278
neonate9 / 31097289
infant0 / 236200 
juvenile4 / 5555671
adult127 / 193912165
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor4 / 34366116
chondrosarcoma10 / 82823120
colorectal tumor15 / 114246131
esophageal tumor2 / 17290115
gastrointestinal tumor8 / 11936967
germ cell tumor10 / 26384537
glioma18 / 106883168
head and neck tumor6 / 13630244
kidney tumor1 / 6895914
leukemia7 / 9584273
liver tumor5 / 9635951
lung tumor7 / 10312767
lymphoma4 / 7175555
non-neoplasia5 / 9725051
normal182 / 336030754
ovarian tumor2 / 7668226
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer4 / 10268038
retinoblastoma4 / 4635686
skin tumor7 / 12494956
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland3 / 3319790
ascites3 / 4001574
bladder1 / 2975733
blood4 / 12347832
bone5 / 7165569
bone marrow0 / 488010 
brain35 / 110098931
cervix6 / 48171124
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus2 / 2020998
eye24 / 211054113
heart9 / 89626100
intestine19 / 23447281
kidney8 / 21177737
larynx3 / 24145124
liver14 / 20774367
lung24 / 33697471
lymph1 / 4427022
lymph node8 / 9161087
mammary gland8 / 15327152
mouth4 / 6705259
muscle1 / 1077159
nerve2 / 15768126
ovary3 / 10205129
pancreas10 / 21481246
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta8 / 28082528
prostate7 / 18934536
salivary gland2 / 2015599
skin9 / 21057442
spleen2 / 5395237
stomach7 / 9661972
testis22 / 33044266
thymus4 / 8113149
thyroid1 / 4747321
tonsil1 / 1699958
trachea2 / 5241338
umbilical cord10 / 13680730
uterus14 / 23287860
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207253_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts168.3
Adipocyte90.85
AdrenalCortex84.65
Adrenalgland77.8
Amygdala72.8
Appendix66.7
AtrioventricularNode70
BDCA4+_DentriticCells191.95
Bonemarrow92.05
BronchialEpithelialCells85.5
CD105+_Endothelial109.05
CD14+_Monocytes195.3
CD19+_BCells(neg._sel.)154.3
CD33+_Myeloid119.85
CD34+158.2
CD4+_Tcells207.35
CD56+_NKCells189.05
CD71+_EarlyErythroid110.95
CD8+_Tcells250.75
CardiacMyocytes96.4
Caudatenucleus68.05
Cerebellum63.7
CerebellumPeduncles104.5
CiliaryGanglion55.05
CingulateCortex92.65
Colorectaladenocarcinoma129.75
DorsalRootGanglion68.35
FetalThyroid88.45
Fetalbrain72.9
Fetalliver79.35
Fetallung75.65
GlobusPallidus63.75
Heart107.8
Hypothalamus80.7
Kidney64.1
Leukemia_chronicMyelogenousK-562108.15
Leukemia_promyelocytic-HL-6083.05
Leukemialymphoblastic(MOLT-4)129.5
Liver113.35
Lung105.8
Lymphnode77.85
Lymphoma_burkitts(Daudi)142.75
Lymphoma_burkitts(Raji)152.7
MedullaOblongata70.45
OccipitalLobe81.3
OlfactoryBulb44.5
Ovary54.2
Pancreas58
PancreaticIslet100.25
ParietalLobe75.5
Pituitary106.4
Placenta94.3
Pons77.1
PrefrontalCortex112.8
Prostate135.4
Salivarygland67.05
SkeletalMuscle49.15
Skin62
SmoothMuscle103.45
Spinalcord64.9
SubthalamicNucleus64
SuperiorCervicalGanglion96.25
TemporalLobe74.4
Testis243.4
TestisGermCell195.45
TestisIntersitial173.35
TestisLeydigCell161.05
TestisSeminiferousTubule227
Thalamus93.1
Thymus96.55
Thyroid104.95
Tongue89.65
Tonsil88.2
Trachea65.15
TrigeminalGanglion65.1
Uterus79.75
UterusCorpus63
WholeBlood283
Wholebrain97.6
colon92.1
pineal_day118.84
pineal_night105.7
retina127.7
small_intestine88.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P54900
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.82 ± 0.63
Basal Forebrain6.96 ± 0.32
Basal Part of Pons7.18 ± 0.27
Cerebellar Cortex7.43 ± 0.27
Cerebellar Nuclei6.84 ± 0.59
Claustrum6.67 ± 0.6
Epithalamus7.14 ± 0.28
Frontal Lobe7.1 ± 0.36
Globus Pallidus6.2 ± 0.28
Hypothalamus6.55 ± 0.52
Insula7.37 ± 0.29
Limbic Lobe7.04 ± 0.51
Mesencephalon6.76 ± 0.54
Myelencephalon7 ± 0.48
Occipital Lobe6.96 ± 0.5
Parietal Lobe7.07 ± 0.38
Pontine Tegmentum7.03 ± 0.45
Striatum6.57 ± 0.41
Subthalamus7.24 ± 0.4
Temporal Lobe7.27 ± 0.35
Thalamus7.04 ± 0.42
White Matter6.49 ± 0.62
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ubn1CBCerebellum22.13
25.42
Ubn1CTXCerebral cortex75.16
55.97
Ubn1HIPHippocampal region46.23
64.79
Ubn1HPFHippocampal formation53.6
59.64
Ubn1HYHypothalamus14.74
10.51
Ubn1LSXLateral septal complex27.54
18.11
Ubn1MBMidbrain16.23
13.34
Ubn1MYMedulla19.65
18.46
Ubn1OLFOlfactory bulb68.72
58.81
Ubn1PPons15.46
14.08
Ubn1PALPallidum24.03
18.99
Ubn1RHPRetrohippocampal region66.88
54.52
Ubn1sAMYStriatum-like amygdalar nuclei19.74
13.02
Ubn1STRStriatum33.51
23.17
Ubn1STRdStriatum dorsal region33.2
23.21
Ubn1STRvStriatum ventral region47.49
32.21
Ubn1THThalamus23.58
18.95
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00012101 12 463 474 YQDECQAHTQAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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