AutismKB 2.0

Annotation Detail for UBIAD1


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Basic Information Top
Gene Symbol:UBIAD1 ( RP4-796F18.1,SCCD,TERE1 )
Gene Full Name: UbiA prenyltransferase domain containing 1
Band: 1p36.22
Quick LinksEntrez ID:29914; OMIM: 611632; Uniprot ID:UBIA1_HUMAN; ENSEMBL ID: ENSG00000120942; HGNC ID: 30791
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus19 / 56401233
neonate3 / 3109796
infant0 / 236200 
juvenile5 / 5555689
adult102 / 193912152
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor3 / 3436687
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor3 / 17290173
gastrointestinal tumor10 / 11936983
germ cell tumor15 / 26384556
glioma3 / 10688328
head and neck tumor4 / 13630229
kidney tumor3 / 6895943
leukemia10 / 95842104
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma5 / 7175569
non-neoplasia2 / 9725020
normal141 / 336030741
ovarian tumor5 / 7668265
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer4 / 10268038
retinoblastoma7 / 46356151
skin tumor11 / 12494988
soft tissue/muscle tissue tumor10 / 12519179
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites7 / 40015174
bladder0 / 297570 
blood7 / 12347856
bone2 / 7165527
bone marrow3 / 4880161
brain52 / 110098947
cervix3 / 4817162
connective tissue7 / 14925546
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus3 / 20209148
eye34 / 211054161
heart0 / 896260 
intestine2 / 2344728
kidney8 / 21177737
larynx0 / 241450 
liver5 / 20774324
lung13 / 33697438
lymph5 / 44270112
lymph node4 / 9161043
mammary gland8 / 15327152
mouth2 / 6705229
muscle10 / 10771592
nerve0 / 157680 
ovary5 / 10205148
pancreas3 / 21481213
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta2 / 2808257
prostate5 / 18934526
salivary gland3 / 20155148
skin20 / 21057494
spleen2 / 5395237
stomach7 / 9661972
testis19 / 33044257
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord0 / 136800 
uterus22 / 23287894
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219131_at
Cell line Expression level Expression bar
721_B_lymphoblasts21.9
Adipocyte16.35
AdrenalCortex17.5
Adrenalgland13.8
Amygdala16.25
Appendix17.75
AtrioventricularNode14.2
BDCA4+_DentriticCells17.6
Bonemarrow16.3
BronchialEpithelialCells16.1
CD105+_Endothelial16.65
CD14+_Monocytes17.4
CD19+_BCells(neg._sel.)18.65
CD33+_Myeloid20.65
CD34+20.55
CD4+_Tcells21.6
CD56+_NKCells18.45
CD71+_EarlyErythroid14.2
CD8+_Tcells19.75
CardiacMyocytes25.65
Caudatenucleus14.7
Cerebellum13.3
CerebellumPeduncles19.05
CiliaryGanglion16.9
CingulateCortex16.7
Colorectaladenocarcinoma16.35
DorsalRootGanglion15.25
FetalThyroid16.45
Fetalbrain16.3
Fetalliver12.05
Fetallung12.3
GlobusPallidus12.25
Heart26.5
Hypothalamus16.2
Kidney13.5
Leukemia_chronicMyelogenousK-56214.7
Leukemia_promyelocytic-HL-6017
Leukemialymphoblastic(MOLT-4)13.25
Liver25.2
Lung19.05
Lymphnode14.1
Lymphoma_burkitts(Daudi)22.6
Lymphoma_burkitts(Raji)24.15
MedullaOblongata14.8
OccipitalLobe14.8
OlfactoryBulb13.05
Ovary12
Pancreas13.35
PancreaticIslet14.7
ParietalLobe18.25
Pituitary19.2
Placenta16.25
Pons15.75
PrefrontalCortex19.25
Prostate18.9
Salivarygland14.3
SkeletalMuscle28.05
Skin17.7
SmoothMuscle18.45
Spinalcord17.5
SubthalamicNucleus16.1
SuperiorCervicalGanglion21.55
TemporalLobe15.15
Testis30.85
TestisGermCell15.9
TestisIntersitial20.55
TestisLeydigCell18.7
TestisSeminiferousTubule20.7
Thalamus16.7
Thymus12.95
Thyroid19.8
Tongue16.35
Tonsil19.05
Trachea13.7
TrigeminalGanglion21.2
Uterus13.05
UterusCorpus14.85
WholeBlood18.35
Wholebrain13.2
colon15.8
pineal_day25.08
pineal_night20.62
retina19.825
small_intestine15.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10068_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.59 ± 1.23
Basal Forebrain1.95 ± 0.27
Basal Part of Pons2.16 ± 1.34
Cerebellar Cortex2.39 ± 0.62
Cerebellar Nuclei2.35 ± 0.79
Claustrum2.59 ± 0.55
Epithalamus1.99 ± 0.73
Frontal Lobe2.16 ± 0.72
Globus Pallidus2.45 ± 0.75
Hypothalamus2.25 ± 0.68
Insula1.99 ± 0.69
Limbic Lobe2.05 ± 0.68
Mesencephalon2.19 ± 0.65
Myelencephalon2.22 ± 0.68
Occipital Lobe2.01 ± 0.86
Parietal Lobe2.1 ± 0.63
Pontine Tegmentum2.08 ± 0.41
Striatum2.25 ± 0.72
Subthalamus2.16 ± 0.67
Temporal Lobe2.16 ± 0.69
Thalamus2.17 ± 0.67
White Matter2.84 ± 0.4
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ubiad1CBCerebellum6.37
6.51
Ubiad1CTXCerebral cortex12.38
8.31
Ubiad1HIPHippocampal region9.19
8.5
Ubiad1HPFHippocampal formation17.29
14.1
Ubiad1HYHypothalamus4.25
3.24
Ubiad1LSXLateral septal complex0.91
0.7
Ubiad1MBMidbrain3.72
3.24
Ubiad1MYMedulla8.99
8.91
Ubiad1OLFOlfactory bulb26.52
19.64
Ubiad1PPons8.61
8.31
Ubiad1PALPallidum3.74
2.94
Ubiad1RHPRetrohippocampal region32.56
23.1
Ubiad1sAMYStriatum-like amygdalar nuclei5.45
4.12
Ubiad1STRStriatum4.21
3.08
Ubiad1STRdStriatum dorsal region3.76
2.91
Ubiad1STRvStriatum ventral region6.19
3.77
Ubiad1THThalamus3.9
2.99
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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