AutismKB 2.0

Annotation Detail for PNMA3


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Basic Information Top
Gene Symbol:PNMA3 ( MA3,MA5,MGC132756,MGC132758 )
Gene Full Name: paraneoplastic antigen MA3
Band: Xq28
Quick LinksEntrez ID:29944; OMIM: 300675; Uniprot ID:PNMA3_HUMAN; ENSEMBL ID: ENSG00000183837; HGNC ID: 18742
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus21 / 56401237
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal242 / 336030772
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain221 / 1100989200
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye5 / 21105423
heart0 / 896260 
intestine0 / 2344720 
kidney3 / 21177714
larynx1 / 2414541
liver1 / 2077434
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary2 / 10205119
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis18 / 33044254
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220923_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.15
Adipocyte11.45
AdrenalCortex20.65
Adrenalgland10.2
Amygdala12.35
Appendix12.05
AtrioventricularNode9.55
BDCA4+_DentriticCells10.75
Bonemarrow11.7
BronchialEpithelialCells11.25
CD105+_Endothelial11.8
CD14+_Monocytes12.4
CD19+_BCells(neg._sel.)11.4
CD33+_Myeloid14.35
CD34+10.6
CD4+_Tcells14.3
CD56+_NKCells12.1
CD71+_EarlyErythroid11.2
CD8+_Tcells10
CardiacMyocytes13.45
Caudatenucleus11.9
Cerebellum9.7
CerebellumPeduncles17.55
CiliaryGanglion8.55
CingulateCortex13.05
Colorectaladenocarcinoma12
DorsalRootGanglion9.7
FetalThyroid11.5
Fetalbrain11.45
Fetalliver10.2
Fetallung8.5
GlobusPallidus15.7
Heart16.75
Hypothalamus12.5
Kidney11
Leukemia_chronicMyelogenousK-56210.85
Leukemia_promyelocytic-HL-6010.75
Leukemialymphoblastic(MOLT-4)10.15
Liver15.65
Lung12.85
Lymphnode11.9
Lymphoma_burkitts(Daudi)16.6
Lymphoma_burkitts(Raji)17.4
MedullaOblongata11.15
OccipitalLobe12.5
OlfactoryBulb9.45
Ovary8.2
Pancreas10
PancreaticIslet12.65
ParietalLobe12.85
Pituitary15.65
Placenta11.3
Pons13.15
PrefrontalCortex14.1
Prostate13.45
Salivarygland13.6
SkeletalMuscle17
Skin11.15
SmoothMuscle13.1
Spinalcord13.8
SubthalamicNucleus14.1
SuperiorCervicalGanglion14.95
TemporalLobe15.55
Testis10
TestisGermCell9.65
TestisIntersitial10.05
TestisLeydigCell11.85
TestisSeminiferousTubule10.3
Thalamus23.85
Thymus8.9
Thyroid12.15
Tongue12.4
Tonsil12.15
Trachea9.7
TrigeminalGanglion12.4
Uterus9.9
UterusCorpus10.95
WholeBlood10.95
Wholebrain9.8
colon11.8
pineal_day15.84
pineal_night14.24
retina13.225
small_intestine11.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P22422
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala12.47 ± 0.34
Basal Forebrain12.22 ± 0.3
Basal Part of Pons12.7 ± 0.38
Cerebellar Cortex12.24 ± 0.16
Cerebellar Nuclei12.22 ± 0.53
Claustrum12.04 ± 0.26
Epithalamus11.63 ± 0.44
Frontal Lobe12.48 ± 0.42
Globus Pallidus11.78 ± 0.68
Hypothalamus12.91 ± 0.63
Insula12.52 ± 0.38
Limbic Lobe12.53 ± 0.39
Mesencephalon12.51 ± 0.54
Myelencephalon12.33 ± 0.59
Occipital Lobe12.52 ± 0.41
Parietal Lobe12.57 ± 0.4
Pontine Tegmentum12.21 ± 0.47
Striatum11.39 ± 0.7
Subthalamus12.94 ± 0.13
Temporal Lobe12.5 ± 0.27
Thalamus11.99 ± 0.4
White Matter10.2 ± 0.42
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pnma3CBCerebellum1.15
2.67
Pnma3CTXCerebral cortex0.47
0.78
Pnma3HIPHippocampal region0.36
0.48
Pnma3HPFHippocampal formation0.28
0.46
Pnma3HYHypothalamus0.45
0.4
Pnma3LSXLateral septal complex0.2
0.1
Pnma3MBMidbrain0.13
0.2
Pnma3MYMedulla0.6
0.94
Pnma3OLFOlfactory bulb0.2
0.39
Pnma3PPons0.23
0.33
Pnma3PALPallidum0.28
0.17
Pnma3RHPRetrohippocampal region0.14
0.44
Pnma3sAMYStriatum-like amygdalar nuclei0.47
0.4
Pnma3STRStriatum0.1
0.12
Pnma3STRdStriatum dorsal region0.04
0.06
Pnma3STRvStriatum ventral region0.1
0.22
Pnma3THThalamus0.25
0.29
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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