AutismKB 2.0

Annotation Detail for GYPC


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Basic Information Top
Gene Symbol:GYPC ( CD236,CD236R,GE,GPC,GYPD,MGC117309,MGC126191,MGC126192 )
Gene Full Name: glycophorin C (Gerbich blood group)
Band: 2q14.3
Quick LinksEntrez ID:2995; OMIM: 110750; Uniprot ID:GLPC_HUMAN; ENSEMBL ID: ENSG00000136732; HGNC ID: 4704
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst0 / 623190 
fetus51 / 56401290
neonate0 / 310970 
infant0 / 236200 
juvenile6 / 55556107
adult108 / 193912155
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor11 / 94178116
cervical tumor0 / 343660 
chondrosarcoma5 / 8282360
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor21 / 26384579
glioma10 / 10688393
head and neck tumor0 / 1363020 
kidney tumor3 / 6895943
leukemia11 / 95842114
liver tumor2 / 9635920
lung tumor6 / 10312758
lymphoma4 / 7175555
non-neoplasia8 / 9725082
normal173 / 336030751
ovarian tumor4 / 7668252
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor26 / 124949208
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood14 / 123478113
bone6 / 7165583
bone marrow1 / 4880120
brain22 / 110098919
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus0 / 202090 
eye8 / 21105437
heart10 / 89626111
intestine7 / 23447229
kidney22 / 211777103
larynx0 / 241450 
liver2 / 2077439
lung17 / 33697450
lymph1 / 4427022
lymph node15 / 91610163
mammary gland14 / 15327191
mouth0 / 670520 
muscle14 / 107715129
nerve2 / 15768126
ovary6 / 10205158
pancreas14 / 21481265
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta19 / 28082567
prostate9 / 18934547
salivary gland2 / 2015599
skin36 / 210574170
spleen4 / 5395274
stomach2 / 9661920
testis3 / 3304429
thymus0 / 811310 
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202947_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts445.4
Adipocyte543.55
AdrenalCortex193.1
Adrenalgland259.75
Amygdala60.2
Appendix203.2
AtrioventricularNode79.8
BDCA4+_DentriticCells137.1
Bonemarrow1466.25
BronchialEpithelialCells45.5
CD105+_Endothelial1874.9
CD14+_Monocytes120.55
CD19+_BCells(neg._sel.)257.6
CD33+_Myeloid114.85
CD34+309.05
CD4+_Tcells607.3
CD56+_NKCells331.75
CD71+_EarlyErythroid3429.8
CD8+_Tcells595.8
CardiacMyocytes170.35
Caudatenucleus81.6
Cerebellum96.65
CerebellumPeduncles93.65
CiliaryGanglion61.95
CingulateCortex135.75
Colorectaladenocarcinoma75.05
DorsalRootGanglion79.6
FetalThyroid111.85
Fetalbrain70.1
Fetalliver1091.45
Fetallung389.55
GlobusPallidus54.05
Heart419.3
Hypothalamus86.25
Kidney136.3
Leukemia_chronicMyelogenousK-562699.7
Leukemia_promyelocytic-HL-6079.4
Leukemialymphoblastic(MOLT-4)60.1
Liver125.5
Lung406.55
Lymphnode218.7
Lymphoma_burkitts(Daudi)115.55
Lymphoma_burkitts(Raji)103.75
MedullaOblongata76.7
OccipitalLobe65.2
OlfactoryBulb71.6
Ovary107.55
Pancreas96.1
PancreaticIslet137
ParietalLobe110.85
Pituitary134.8
Placenta144.25
Pons82.8
PrefrontalCortex103
Prostate136.7
Salivarygland83
SkeletalMuscle351.95
Skin75.1
SmoothMuscle136.3
Spinalcord137.2
SubthalamicNucleus93.95
SuperiorCervicalGanglion83.55
TemporalLobe64.85
Testis81
TestisGermCell65.35
TestisIntersitial50.15
TestisLeydigCell77.4
TestisSeminiferousTubule65.8
Thalamus71.1
Thymus267.9
Thyroid140.65
Tongue102.75
Tonsil197.95
Trachea109.25
TrigeminalGanglion105
Uterus158.75
UterusCorpus233.85
WholeBlood257.2
Wholebrain49.9
colon124.6
pineal_day68.46
pineal_night62.82
retina158.75
small_intestine122.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_12717_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.01 ± 0.61
Basal Forebrain5.78 ± 0.16
Basal Part of Pons5.83 ± 0.23
Cerebellar Cortex5.42 ± 0.23
Cerebellar Nuclei6.06 ± 0.42
Claustrum6.25 ± 0.53
Epithalamus5.12 ± 0.51
Frontal Lobe5.82 ± 0.43
Globus Pallidus6.23 ± 0.28
Hypothalamus5.82 ± 0.45
Insula5.64 ± 0.4
Limbic Lobe5.89 ± 0.44
Mesencephalon5.91 ± 0.41
Myelencephalon5.84 ± 0.48
Occipital Lobe5.83 ± 0.42
Parietal Lobe5.84 ± 0.42
Pontine Tegmentum5.85 ± 0.36
Striatum6.17 ± 0.43
Subthalamus5.71 ± 0.01
Temporal Lobe5.75 ± 0.45
Thalamus5.95 ± 0.31
White Matter5.63 ± 0.34
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
GypcCBCerebellum10.44
12.95
GypcCTXCerebral cortex25.22
18.4
GypcHIPHippocampal region19.26
21.25
GypcHPFHippocampal formation22.79
22.32
GypcHYHypothalamus4.28
3.42
GypcLSXLateral septal complex2.7
2.01
GypcMBMidbrain8.52
8.03
GypcMYMedulla10.93
11.07
GypcOLFOlfactory bulb29.33
23.34
GypcPPons9.81
11.84
GypcPALPallidum5.51
4.66
GypcRHPRetrohippocampal region28.73
23.97
GypcsAMYStriatum-like amygdalar nuclei5.15
4.86
GypcSTRStriatum8.06
6.46
GypcSTRdStriatum dorsal region6.34
5.11
GypcSTRvStriatum ventral region19.2
13.84
GypcTHThalamus7.73
6.83
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00032220 25 102 126 AESADAALQGDPALQDAGDSSRKEY Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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