Annotation Detail for SERTAD1
Basic Information Top
| Gene Symbol: | SERTAD1 ( SEI1,TRIP-Br1 ) |
|---|---|
| Gene Full Name: | SERTA domain containing 1 |
| Band: | 19q13.1-q13.2 |
| Quick Links | Entrez ID:29950; OMIM: NA; Uniprot ID:SRTD1_HUMAN; ENSEMBL ID: ENSG00000197019; HGNC ID: 17932 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.269898
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 56 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 59 / 3360307 | 17 | |
| ovarian tumor | 12 / 76682 | 156 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 2 / 89626 | 22 | |
| intestine | 10 / 234472 | 42 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 12 / 102051 | 117 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_2307_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.46 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.18 ± 0.46 | |
| Basal Part of Pons | 3.45 ± 0.69 | |
| Cerebellar Cortex | 3.56 ± 0.61 | |
| Cerebellar Nuclei | 3.45 ± 0.54 | |
| Claustrum | 3.31 ± 0.61 | |
| Epithalamus | 3.06 ± 0.75 | |
| Frontal Lobe | 3.52 ± 0.61 | |
| Globus Pallidus | 3.33 ± 0.83 | |
| Hypothalamus | 2.94 ± 0.58 | |
| Insula | 3.47 ± 0.79 | |
| Limbic Lobe | 3.37 ± 0.6 | |
| Mesencephalon | 3.48 ± 0.66 | |
| Myelencephalon | 3.5 ± 0.6 | |
| Occipital Lobe | 3.36 ± 0.6 | |
| Parietal Lobe | 3.34 ± 0.64 | |
| Pontine Tegmentum | 3.36 ± 0.59 | |
| Striatum | 3.32 ± 0.53 | |
| Subthalamus | 3.28 ± 0.67 | |
| Temporal Lobe | 3.49 ± 0.52 | |
| Thalamus | 3.43 ± 0.5 | |
| White Matter | 2.85 ± 1.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sertad1 | CB | Cerebellum | 3.43 | |
| 4.07 | | |||
| Sertad1 | CTX | Cerebral cortex | 15.11 | |
| 10.9 | | |||
| Sertad1 | HIP | Hippocampal region | 2.26 | |
| 1.95 | | |||
| Sertad1 | HPF | Hippocampal formation | 2.48 | |
| 2.12 | | |||
| Sertad1 | HY | Hypothalamus | 0.5 | |
| 0.46 | | |||
| Sertad1 | LSX | Lateral septal complex | 0.81 | |
| 1.2 | | |||
| Sertad1 | MB | Midbrain | 1.18 | |
| 1.43 | | |||
| Sertad1 | MY | Medulla | 6.22 | |
| 6.87 | | |||
| Sertad1 | OLF | Olfactory bulb | 11.42 | |
| 9.97 | | |||
| Sertad1 | P | Pons | 2.28 | |
| 2.91 | | |||
| Sertad1 | PAL | Pallidum | 0.75 | |
| 0.62 | | |||
| Sertad1 | RHP | Retrohippocampal region | 2.81 | |
| 2.29 | | |||
| Sertad1 | sAMY | Striatum-like amygdalar nuclei | 0.73 | |
| 0.59 | | |||
| Sertad1 | STR | Striatum | 2.26 | |
| 1.62 | | |||
| Sertad1 | STRd | Striatum dorsal region | 2.11 | |
| 1.5 | | |||
| Sertad1 | STRv | Striatum ventral region | 3.55 | |
| 2.32 | | |||
| Sertad1 | TH | Thalamus | 1.32 | |
| 1.04 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| SRTD1_HUMAN_59 | 7 | 59 | 65 | QSEPDLR | PRIDE |