AutismKB 2.0

Annotation Detail for C16orf5


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Basic Information Top
Gene Symbol:C16orf5 ( CDIP,I1 )
Gene Full Name: chromosome 16 open reading frame 5
Band: 16p13.3
Quick LinksEntrez ID:29965; OMIM: 610503; Uniprot ID:LITFL_HUMAN; ENSEMBL ID: ENSG00000089486; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst4 / 6231964
fetus30 / 56401253
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult91 / 193912146
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma6 / 8282372
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor5 / 26384518
glioma25 / 106883233
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia4 / 9584241
liver tumor10 / 96359103
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal213 / 336030763
ovarian tumor1 / 7668213
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma3 / 4635664
skin tumor2 / 12494916
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood11 / 12347889
bone3 / 7165541
bone marrow2 / 4880140
brain149 / 1100989135
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye26 / 211054123
heart5 / 8962655
intestine5 / 23447221
kidney11 / 21177751
larynx2 / 2414582
liver10 / 20774348
lung10 / 33697429
lymph0 / 442700 
lymph node2 / 9161021
mammary gland1 / 1532716
mouth2 / 6705229
muscle1 / 1077159
nerve2 / 15768126
ovary2 / 10205119
pancreas15 / 21481269
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta3 / 28082510
prostate3 / 18934515
salivary gland0 / 201550 
skin6 / 21057428
spleen3 / 5395255
stomach4 / 9661941
testis14 / 33044242
thymus2 / 8113124
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218183_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte4.8
AdrenalCortex5.2
Adrenalgland4.15
Amygdala5.2
Appendix5
AtrioventricularNode3.85
BDCA4+_DentriticCells5.35
Bonemarrow4.85
BronchialEpithelialCells4.9
CD105+_Endothelial5.05
CD14+_Monocytes5.3
CD19+_BCells(neg._sel.)5.3
CD33+_Myeloid6.3
CD34+6.3
CD4+_Tcells6.05
CD56+_NKCells7.05
CD71+_EarlyErythroid4.65
CD8+_Tcells8.15
CardiacMyocytes6.1
Caudatenucleus4.45
Cerebellum3.95
CerebellumPeduncles5.6
CiliaryGanglion3.55
CingulateCortex5
Colorectaladenocarcinoma4.9
DorsalRootGanglion3.8
FetalThyroid4.7
Fetalbrain5.95
Fetalliver4.2
Fetallung4
GlobusPallidus3.6
Heart6.35
Hypothalamus5.6
Kidney3.95
Leukemia_chronicMyelogenousK-5624.45
Leukemia_promyelocytic-HL-604.3
Leukemialymphoblastic(MOLT-4)3.8
Liver6.65
Lung5.45
Lymphnode4.2
Lymphoma_burkitts(Daudi)6.15
Lymphoma_burkitts(Raji)6.9
MedullaOblongata4.4
OccipitalLobe4.45
OlfactoryBulb3.9
Ovary3.3
Pancreas3.95
PancreaticIslet5.25
ParietalLobe5.2
Pituitary5.8
Placenta4.95
Pons4.7
PrefrontalCortex8.2
Prostate6.2
Salivarygland3.95
SkeletalMuscle5.7
Skin3.85
SmoothMuscle5.55
Spinalcord5.25
SubthalamicNucleus4.5
SuperiorCervicalGanglion5.55
TemporalLobe4.5
Testis4.25
TestisGermCell4.15
TestisIntersitial4.15
TestisLeydigCell4.9
TestisSeminiferousTubule4.25
Thalamus5
Thymus4
Thyroid6.3
Tongue4.9
Tonsil4.75
Trachea4.05
TrigeminalGanglion4.95
Uterus4.1
UterusCorpus4.4
WholeBlood5.4
Wholebrain4.25
colon4.9
pineal_day11.24
pineal_night10.82
retina6.15
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5437_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.67 ± 0.51
Basal Forebrain6.02 ± 0.82
Basal Part of Pons5.88 ± 0.36
Cerebellar Cortex5.5 ± 0.48
Cerebellar Nuclei5.6 ± 0.53
Claustrum5.57 ± 0.61
Epithalamus5.23 ± 0.53
Frontal Lobe5.85 ± 0.5
Globus Pallidus5.11 ± 0.38
Hypothalamus5.82 ± 0.26
Insula5.63 ± 0.46
Limbic Lobe5.8 ± 0.48
Mesencephalon5.75 ± 0.52
Myelencephalon5.73 ± 0.56
Occipital Lobe5.91 ± 0.48
Parietal Lobe5.76 ± 0.47
Pontine Tegmentum5.64 ± 0.56
Striatum5.73 ± 0.53
Subthalamus5.32 ± 0.26
Temporal Lobe5.81 ± 0.46
Thalamus5.84 ± 0.49
White Matter4.4 ± 0.53
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
5730403B10RikCBCerebellum85.06
100
5730403B10RikCTXCerebral cortex100
100
5730403B10RikHIPHippocampal region100
100
5730403B10RikHPFHippocampal formation100
100
5730403B10RikHYHypothalamus100
100
5730403B10RikLSXLateral septal complex100
100
5730403B10RikMBMidbrain100
100
5730403B10RikMYMedulla90.22
100
5730403B10RikOLFOlfactory bulb100
100
5730403B10RikPPons88.67
100
5730403B10RikPALPallidum100
100
5730403B10RikRHPRetrohippocampal region100
100
5730403B10RiksAMYStriatum-like amygdalar nuclei100
100
5730403B10RikSTRStriatum100
100
5730403B10RikSTRdStriatum dorsal region100
100
5730403B10RikSTRvStriatum ventral region100
100
5730403B10RikTHThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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