AutismKB 2.0

Annotation Detail for SCHIP1


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Basic Information Top
Gene Symbol:SCHIP1 ( FLJ39160,SCHIP-1 )
Gene Full Name: schwannomin interacting protein 1
Band: 3q25.33
Quick LinksEntrez ID:29970; OMIM: NA; Uniprot ID:SCHI1_HUMAN; ENSEMBL ID: ENSG00000151967,ENSG00000214216; HGNC ID: 15678
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst1 / 6231916
fetus40 / 56401270
neonate1 / 3109732
infant5 / 23620211
juvenile2 / 5555635
adult52 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor6 / 26384522
glioma9 / 10688384
head and neck tumor2 / 13630214
kidney tumor5 / 6895972
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal200 / 336030759
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone3 / 7165541
bone marrow2 / 4880140
brain167 / 1100989151
cervix1 / 4817120
connective tissue1 / 1492556
ear1 / 1621261
embryonic tissue15 / 21572269
esophagus1 / 2020949
eye8 / 21105437
heart5 / 8962655
intestine6 / 23447225
kidney11 / 21177751
larynx0 / 241450 
liver2 / 2077439
lung7 / 33697420
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth1 / 6705214
muscle7 / 10771564
nerve1 / 1576863
ovary1 / 1020519
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate1 / 1893455
salivary gland0 / 201550 
skin8 / 21057437
spleen0 / 539520 
stomach2 / 9661920
testis7 / 33044221
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular7 / 51780135
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204030_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.95
Adipocyte7.5
AdrenalCortex10.85
Adrenalgland7.75
Amygdala1220.15
Appendix24.85
AtrioventricularNode9.3
BDCA4+_DentriticCells12.75
Bonemarrow8.25
BronchialEpithelialCells22.6
CD105+_Endothelial20.4
CD14+_Monocytes8.15
CD19+_BCells(neg._sel.)8.85
CD33+_Myeloid9.65
CD34+109.4
CD4+_Tcells7.2
CD56+_NKCells8.4
CD71+_EarlyErythroid6.7
CD8+_Tcells7.25
CardiacMyocytes23.05
Caudatenucleus231.65
Cerebellum108.2
CerebellumPeduncles112.6
CiliaryGanglion8.95
CingulateCortex187.45
Colorectaladenocarcinoma57.85
DorsalRootGanglion16.6
FetalThyroid12.4
Fetalbrain271.9
Fetalliver7.1
Fetallung42.2
GlobusPallidus68.8
Heart13.8
Hypothalamus415.35
Kidney12.1
Leukemia_chronicMyelogenousK-5626.95
Leukemia_promyelocytic-HL-606.45
Leukemialymphoblastic(MOLT-4)7
Liver10.45
Lung35.1
Lymphnode6.5
Lymphoma_burkitts(Daudi)9.55
Lymphoma_burkitts(Raji)11.4
MedullaOblongata234.7
OccipitalLobe419.65
OlfactoryBulb93.75
Ovary6.5
Pancreas6.15
PancreaticIslet7.7
ParietalLobe270.95
Pituitary30.25
Placenta62.1
Pons104.1
PrefrontalCortex756.05
Prostate16.1
Salivarygland6.6
SkeletalMuscle19.9
Skin10.4
SmoothMuscle14.85
Spinalcord548.1
SubthalamicNucleus180.35
SuperiorCervicalGanglion15.35
TemporalLobe118.55
Testis9.05
TestisGermCell8.4
TestisIntersitial9.35
TestisLeydigCell9.95
TestisSeminiferousTubule6.45
Thalamus144.75
Thymus6.05
Thyroid15.65
Tongue13.75
Tonsil7.45
Trachea10.75
TrigeminalGanglion25.6
Uterus57.95
UterusCorpus10.1
WholeBlood7.95
Wholebrain588.8
colon16.7
pineal_day73.62
pineal_night85.6
retina212.675
small_intestine17.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10207_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.71 ± 0.22
Basal Forebrain9.23 ± 0.15
Basal Part of Pons9.42 ± 0.21
Cerebellar Cortex9.31 ± 0.21
Cerebellar Nuclei9.51 ± 0.33
Claustrum9.69 ± 0.26
Epithalamus9.39 ± 0.14
Frontal Lobe9.57 ± 0.28
Globus Pallidus9.77 ± 0.18
Hypothalamus9.17 ± 0.25
Insula9.47 ± 0.24
Limbic Lobe9.71 ± 0.33
Mesencephalon9.45 ± 0.36
Myelencephalon9.51 ± 0.36
Occipital Lobe9.36 ± 0.32
Parietal Lobe9.61 ± 0.29
Pontine Tegmentum9.58 ± 0.27
Striatum9.07 ± 0.39
Subthalamus9.51 ± 0.13
Temporal Lobe9.63 ± 0.26
Thalamus9.31 ± 0.28
White Matter10.72 ± 0.47
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Schip1CBCerebellum100
100
Schip1CTXCerebral cortex100
100
Schip1HIPHippocampal region100
100
Schip1HPFHippocampal formation100
100
Schip1HYHypothalamus57.35
60.4
Schip1LSXLateral septal complex100
100
Schip1MBMidbrain56.28
67.35
Schip1MYMedulla61.84
86.79
Schip1OLFOlfactory bulb100
100
Schip1PPons42.64
58.87
Schip1PALPallidum69.27
79.73
Schip1RHPRetrohippocampal region100
100
Schip1sAMYStriatum-like amygdalar nuclei100
100
Schip1STRStriatum83.87
82.51
Schip1STRdStriatum dorsal region72.27
69.87
Schip1STRvStriatum ventral region87.9
82.34
Schip1THThalamus80.19
91.07
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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