Annotation Detail for SLC40A1
Basic Information Top
| Gene Symbol: | SLC40A1 ( FPN1,HFE4,IREG1,MST079,MTP1,SLC11A3 ) |
|---|---|
| Gene Full Name: | solute carrier family 40 (iron-regulated transporter), member 1 |
| Band: | 2q32.2 |
| Quick Links | Entrez ID:30061; OMIM: 604653; Uniprot ID:S40A1_HUMAN; ENSEMBL ID: ENSG00000138449; HGNC ID: 10909 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.643005
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 95 / 564012 | 168 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 294 / 1939121 | 151 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 10 / 82823 | 120 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 404 / 3360307 | 120 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 41 / 90257 | 454 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 7 / 33197 | 210 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 4 / 29757 | 134 | |
| blood | 14 / 123478 | 113 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 31 / 1100989 | 28 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 17 / 149255 | 113 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 14 / 89626 | 156 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 0 / 24145 | 0 | |
| liver | 47 / 207743 | 226 | |
| lung | 23 / 336974 | 68 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 65 / 107715 | 603 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 20 / 214812 | 93 | |
| parathyroid | 20 / 20539 | 973 | |
| pharynx | 12 / 41328 | 290 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 72 / 280825 | 256 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 12 / 53952 | 222 | |
| stomach | 8 / 96619 | 82 | |
| testis | 20 / 330442 | 60 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 14 / 52413 | 267 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 56 / 232878 | 240 | |
| vascular | 3 / 51780 | 57 | |
- Probe name: A_32_P151454
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.24 ± 1.02 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.87 ± 0.3 | |
| Basal Part of Pons | 1.48 ± 0.35 | |
| Cerebellar Cortex | 1.64 ± 0.59 | |
| Cerebellar Nuclei | 2.1 ± 0.74 | |
| Claustrum | 2.78 ± 0.91 | |
| Epithalamus | 1.57 ± 0.73 | |
| Frontal Lobe | 1.67 ± 0.75 | |
| Globus Pallidus | 2.42 ± 0.49 | |
| Hypothalamus | 1.85 ± 0.69 | |
| Insula | 1.96 ± 1.1 | |
| Limbic Lobe | 1.8 ± 0.67 | |
| Mesencephalon | 1.99 ± 0.67 | |
| Myelencephalon | 1.84 ± 0.66 | |
| Occipital Lobe | 1.85 ± 0.63 | |
| Parietal Lobe | 1.79 ± 0.62 | |
| Pontine Tegmentum | 1.88 ± 0.7 | |
| Striatum | 2 ± 0.66 | |
| Subthalamus | 1.97 ± 0.67 | |
| Temporal Lobe | 1.72 ± 0.58 | |
| Thalamus | 1.8 ± 0.55 | |
| White Matter | 2.18 ± 0.22 | |
Mouse Brain ISH 