Annotation Detail for HIST1H1A
Basic Information Top
Gene Symbol: | HIST1H1A ( H1.1,H1A,H1F1,HIST1,MGC126642,MGC138345 ) |
---|---|
Gene Full Name: | histone cluster 1, H1a |
Band: | 6p22.2 |
Quick Links | Entrez ID:3024; OMIM: 142709; Uniprot ID:H11_HUMAN; ENSEMBL ID: ENSG00000124610; HGNC ID: 4715 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.150206
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 0 / 564012 | 0 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 2 / 1939121 | 1 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 0 / 119369 | 0 | |
germ cell tumor | 0 / 263845 | 0 | |
glioma | 0 / 106883 | 0 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 0 / 97250 | 0 | |
normal | 0 / 3360307 | 0 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 0 / 90257 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 0 / 123478 | 0 | |
bone | 0 / 71655 | 0 | |
bone marrow | 0 / 48801 | 0 | |
brain | 0 / 1100989 | 0 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 0 / 149255 | 0 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 0 / 215722 | 0 | |
esophagus | 0 / 20209 | 0 | |
eye | 0 / 211054 | 0 | |
heart | 0 / 89626 | 0 | |
intestine | 2 / 234472 | 8 | |
kidney | 0 / 211777 | 0 | |
larynx | 0 / 24145 | 0 | |
liver | 0 / 207743 | 0 | |
lung | 0 / 336974 | 0 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 0 / 102051 | 0 | |
pancreas | 0 / 214812 | 0 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 0 / 280825 | 0 | |
prostate | 0 / 189345 | 0 | |
salivary gland | 0 / 20155 | 0 | |
skin | 0 / 210574 | 0 | |
spleen | 0 / 53952 | 0 | |
stomach | 0 / 96619 | 0 | |
testis | 0 / 330442 | 0 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 0 / 232878 | 0 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 208484_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 10 | |
Adipocyte | 8.1 | |
AdrenalCortex | 10.25 | |
Adrenalgland | 7.45 | |
Amygdala | 8.85 | |
Appendix | 10.9 | |
AtrioventricularNode | 7 | |
BDCA4+_DentriticCells | 8.95 | |
Bonemarrow | 8.85 | |
BronchialEpithelialCells | 8.15 | |
CD105+_Endothelial | 8.25 | |
CD14+_Monocytes | 9.6 | |
CD19+_BCells(neg._sel.) | 8.8 | |
CD33+_Myeloid | 10.35 | |
CD34+ | 10.45 | |
CD4+_Tcells | 8.8 | |
CD56+_NKCells | 9.65 | |
CD71+_EarlyErythroid | 7.95 | |
CD8+_Tcells | 7.8 | |
CardiacMyocytes | 17.4 | |
Caudatenucleus | 7.45 | |
Cerebellum | 6.95 | |
CerebellumPeduncles | 10.4 | |
CiliaryGanglion | 6.25 | |
CingulateCortex | 8.9 | |
Colorectaladenocarcinoma | 8.5 | |
DorsalRootGanglion | 6.8 | |
FetalThyroid | 8.2 | |
Fetalbrain | 7.9 | |
Fetalliver | 9.1 | |
Fetallung | 6.7 | |
GlobusPallidus | 6.55 | |
Heart | 15.25 | |
Hypothalamus | 8.8 | |
Kidney | 8.25 | |
Leukemia_chronicMyelogenousK-562 | 7.35 | |
Leukemia_promyelocytic-HL-60 | 7.35 | |
Leukemialymphoblastic(MOLT-4) | 6.25 | |
Liver | 12.7 | |
Lung | 9.05 | |
Lymphnode | 6.9 | |
Lymphoma_burkitts(Daudi) | 10.9 | |
Lymphoma_burkitts(Raji) | 19.9 | |
MedullaOblongata | 7.65 | |
OccipitalLobe | 7.45 | |
OlfactoryBulb | 6.6 | |
Ovary | 5.7 | |
Pancreas | 6.8 | |
PancreaticIslet | 9.1 | |
ParietalLobe | 10.3 | |
Pituitary | 10.05 | |
Placenta | 8.4 | |
Pons | 8.5 | |
PrefrontalCortex | 10.3 | |
Prostate | 9.55 | |
Salivarygland | 7.4 | |
SkeletalMuscle | 12.85 | |
Skin | 6.8 | |
SmoothMuscle | 9.3 | |
Spinalcord | 9 | |
SubthalamicNucleus | 7.95 | |
SuperiorCervicalGanglion | 14.35 | |
TemporalLobe | 7.75 | |
Testis | 7.05 | |
TestisGermCell | 6.85 | |
TestisIntersitial | 7.1 | |
TestisLeydigCell | 8.85 | |
TestisSeminiferousTubule | 7.1 | |
Thalamus | 9 | |
Thymus | 6 | |
Thyroid | 10.4 | |
Tongue | 8.8 | |
Tonsil | 8.2 | |
Trachea | 7.05 | |
TrigeminalGanglion | 11.4 | |
Uterus | 6.7 | |
UterusCorpus | 7.95 | |
WholeBlood | 8.95 | |
Wholebrain | 6.2 | |
colon | 8.4 | |
pineal_day | 10.56 | |
pineal_night | 10.34 | |
retina | 10.3 | |
small_intestine | 8.1 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_2312_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 2.87 ± 1.1 | |
Basal Forebrain | 1.92 ± 0.28 | |
Basal Part of Pons | 2.26 ± 0.55 | |
Cerebellar Cortex | 2.06 ± 0.59 | |
Cerebellar Nuclei | 2.46 ± 0.67 | |
Claustrum | 2.96 ± 0.9 | |
Epithalamus | 2.04 ± 0.78 | |
Frontal Lobe | 2.3 ± 0.74 | |
Globus Pallidus | 2.43 ± 0.57 | |
Hypothalamus | 2.9 ± 0.68 | |
Insula | 2.39 ± 0.7 | |
Limbic Lobe | 2.22 ± 0.62 | |
Mesencephalon | 2.57 ± 0.7 | |
Myelencephalon | 2.43 ± 0.68 | |
Occipital Lobe | 2.49 ± 0.66 | |
Parietal Lobe | 2.39 ± 0.62 | |
Pontine Tegmentum | 2.38 ± 0.76 | |
Striatum | 2.25 ± 0.61 | |
Subthalamus | 2.44 ± 0.63 | |
Temporal Lobe | 2.52 ± 0.69 | |
Thalamus | 2.33 ± 0.63 | |
White Matter | 2.05 ± 0.32 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Hist1h1a | CB | Cerebellum | 1.61 | |
1.82 | ||||
Hist1h1a | CTX | Cerebral cortex | 1.3 | |
1.46 | ||||
Hist1h1a | HIP | Hippocampal region | 2.17 | |
3.15 | ||||
Hist1h1a | HPF | Hippocampal formation | 1.73 | |
2.11 | ||||
Hist1h1a | HY | Hypothalamus | 0.29 | |
0.33 | ||||
Hist1h1a | LSX | Lateral septal complex | 2.19 | |
3.92 | ||||
Hist1h1a | MB | Midbrain | 1.16 | |
1.33 | ||||
Hist1h1a | MY | Medulla | 1.34 | |
1.4 | ||||
Hist1h1a | OLF | Olfactory bulb | 1.49 | |
1.99 | ||||
Hist1h1a | P | Pons | 0.89 | |
0.97 | ||||
Hist1h1a | PAL | Pallidum | 0.3 | |
0.29 | ||||
Hist1h1a | RHP | Retrohippocampal region | 1.05 | |
0.81 | ||||
Hist1h1a | sAMY | Striatum-like amygdalar nuclei | 0.55 | |
0.43 | ||||
Hist1h1a | STR | Striatum | 1.49 | |
2.57 | ||||
Hist1h1a | STRd | Striatum dorsal region | 1.34 | |
2.49 | ||||
Hist1h1a | STRv | Striatum ventral region | 0.93 | |
1.22 | ||||
Hist1h1a | TH | Thalamus | 1.14 | |
1.61 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
H11_HUMAN_58 | 24 | 58 | 81 | GVSLAALKKALAAAGYDVEKNNSR | PRIDE |
PAp00000491 | 11 | 68 | 78 | ALAAAGYDVEK | Peptide Atlas |