AutismKB 2.0

Annotation Detail for HBA1


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Basic Information Top
Gene Symbol:HBA1 ( CD31,MGC126895,MGC126897 )
Gene Full Name: hemoglobin, alpha 1
Band: 16p13.3
Quick LinksEntrez ID:3039; OMIM: 141800; Uniprot ID:HBA_HUMAN; ENSEMBL ID: ENSG00000206172; HGNC ID: 4823
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus658 / 5640121166
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult253 / 1939121130
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma8 / 8282396
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma7 / 10688365
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia29 / 95842302
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal991 / 3360307294
ovarian tumor0 / 766820 
pancreatic tumor27 / 104616258
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood35 / 123478283
bone2 / 7165527
bone marrow21 / 48801430
brain42 / 110098938
cervix0 / 481710 
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye10 / 21105447
heart29 / 89626323
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver104 / 207743500
lung16 / 33697447
lymph0 / 442700 
lymph node2 / 9161021
mammary gland11 / 15327171
mouth0 / 670520 
muscle17 / 107715157
nerve1 / 1576863
ovary2 / 10205119
pancreas69 / 214812321
parathyroid2 / 2053997
pharynx30 / 41328725
pituitary gland1 / 1658560
placenta128 / 280825455
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen187 / 539523466
stomach0 / 966190 
testis0 / 3304420 
thymus5 / 8113161
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211745_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.7
Adipocyte11.7
AdrenalCortex1512.9
Adrenalgland3241.95
Amygdala2368.65
Appendix33157.7
AtrioventricularNode13152.8
BDCA4+_DentriticCells7.05
Bonemarrow35056.35
BronchialEpithelialCells14.7
CD105+_Endothelial28391.8
CD14+_Monocytes38.3
CD19+_BCells(neg._sel.)16.05
CD33+_Myeloid242.65
CD34+1204.95
CD4+_Tcells144.35
CD56+_NKCells118.3
CD71+_EarlyErythroid37643.1
CD8+_Tcells464.4
CardiacMyocytes8.1
Caudatenucleus718.2
Cerebellum1417.05
CerebellumPeduncles2322.5
CiliaryGanglion3846.4
CingulateCortex1341.8
Colorectaladenocarcinoma13.4
DorsalRootGanglion8079.3
FetalThyroid22649.3
Fetalbrain8765.95
Fetalliver28577.1
Fetallung34705.05
GlobusPallidus1034.1
Heart21930.15
Hypothalamus1699.25
Kidney7606.25
Leukemia_chronicMyelogenousK-5622775.35
Leukemia_promyelocytic-HL-608.65
Leukemialymphoblastic(MOLT-4)10.25
Liver6093.6
Lung27278.7
Lymphnode2198.25
Lymphoma_burkitts(Daudi)19.05
Lymphoma_burkitts(Raji)16.5
MedullaOblongata1737.75
OccipitalLobe1512
OlfactoryBulb2861.55
Ovary7292.8
Pancreas510.8
PancreaticIslet613.9
ParietalLobe835.6
Pituitary5169.45
Placenta20605.85
Pons7797.95
PrefrontalCortex3879.3
Prostate11311.4
Salivarygland684.2
SkeletalMuscle13286.15
Skin8769.15
SmoothMuscle16.2
Spinalcord7861.6
SubthalamicNucleus2575.1
SuperiorCervicalGanglion3290.45
TemporalLobe6706.55
Testis613.3
TestisGermCell3718.9
TestisIntersitial14375.65
TestisLeydigCell7128.75
TestisSeminiferousTubule3562.55
Thalamus1918.5
Thymus4045.5
Thyroid8380.2
Tongue1113.5
Tonsil52
Trachea2505.9
TrigeminalGanglion10022.9
Uterus2388.5
UterusCorpus419
WholeBlood10841.85
Wholebrain2806.7
colon678.05
pineal_day635.86
pineal_night391.76
retina9898.4
small_intestine943.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P142305
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.08 ± 0.25
Basal Forebrain7.47 ± 0.52
Basal Part of Pons7.01 ± 0.54
Cerebellar Cortex6.8 ± 0.56
Cerebellar Nuclei7.56 ± 0.6
Claustrum6.65 ± 0.54
Epithalamus7.22 ± 0.56
Frontal Lobe7.25 ± 0.64
Globus Pallidus7.93 ± 0.88
Hypothalamus7.51 ± 0.76
Insula7.21 ± 0.59
Limbic Lobe6.82 ± 0.63
Mesencephalon7.2 ± 0.67
Myelencephalon7.13 ± 0.64
Occipital Lobe6.86 ± 0.65
Parietal Lobe6.84 ± 0.6
Pontine Tegmentum7.5 ± 0.58
Striatum8.03 ± 0.55
Subthalamus7.26 ± 0.78
Temporal Lobe6.93 ± 0.55
Thalamus7.25 ± 0.54
White Matter7.26 ± 0.61
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HBA_HUMAN_101 40 101 140 LLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSK PRIDE
HBA_HUMAN_128 12 128 139 FLASVSTVLTSK PRIDE
HBA_HUMAN_129 12 129 140 FLASVSTVLTSK PRIDE
HBA_HUMAN_17 15 17 31 VGAHAGEYGAEALER PRIDE
HBA_HUMAN_18 15 18 32 VGAHAGEYGAEALER PRIDE
HBA_HUMAN_2 11 2 12 VLSPADKTNVK PRIDE
HBA_HUMAN_2 7 2 8 VLSPADK PRIDE
HBA_HUMAN_32 9 32 40 MFLSFPTTK PRIDE
HBA_HUMAN_33 9 33 41 MFLSFPTTK PRIDE
HBA_HUMAN_41 16 41 56 TYFPHFDLSHGSAQVK PRIDE
HBA_HUMAN_42 16 42 57 TYFPHFDLSHGSAQVK PRIDE
HBA_HUMAN_44 14 44 57 FPHFDLSHGSAQVK PRIDE
HBA_HUMAN_61 30 61 90 KVADALTNAVAHVDDMPNALSALSDLHAHK PRIDE
HBA_HUMAN_62 29 62 90 VADALTNAVAHVDDMPNALSALSDLHAHK PRIDE
HBA_HUMAN_62 30 62 91 KVADALTNAVAHVDDMPNALSALSDLHAHK PRIDE
HBA_HUMAN_63 29 63 91 VADALTNAVAHVDDMPNALSALSDLHAHK PRIDE
HBA_HUMAN_91 9 91 99 LRVDPVNFK PRIDE
HBA_HUMAN_92 9 92 100 LRVDPVNFK PRIDE
HBA_HUMAN_93 7 93 99 VDPVNFK PRIDE
HBA_HUMAN_94 7 94 100 VDPVNFK PRIDE
PAp00008068 16 42 57 TYFPHFDLSHGSAQVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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