AutismKB 2.0

Annotation Detail for HDLBP


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:HDLBP ( FLJ16432,HBP,PRO2900,VGL )
Gene Full Name: high density lipoprotein binding protein
Band: 2q37.3
Quick LinksEntrez ID:3069; OMIM: 142695; Uniprot ID:VIGLN_HUMAN; ENSEMBL ID: ENSG00000115677; HGNC ID: 4857
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body76 / 707611074
blastocyst37 / 62319593
fetus272 / 564012482
neonate98 / 310973151
infant5 / 23620211
juvenile33 / 55556593
adult1149 / 1939121592
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma9 / 17475515
breast (mammary gland) tumor107 / 941781136
cervical tumor14 / 34366407
chondrosarcoma38 / 82823458
colorectal tumor98 / 114246857
esophageal tumor3 / 17290173
gastrointestinal tumor84 / 119369703
germ cell tumor187 / 263845708
glioma56 / 106883523
head and neck tumor190 / 1363021393
kidney tumor45 / 68959652
leukemia29 / 95842302
liver tumor98 / 963591017
lung tumor86 / 103127833
lymphoma33 / 71755459
non-neoplasia32 / 97250329
normal1653 / 3360307491
ovarian tumor67 / 76682873
pancreatic tumor79 / 104616755
primitive neuroectodermal tumor of the CNS38 / 125680302
prostate cancer82 / 102680798
retinoblastoma52 / 463561121
skin tumor121 / 124949968
soft tissue/muscle tissue tumor89 / 125191710
uterine tumor64 / 90257709
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue6 / 13106457
adrenal gland13 / 33197391
ascites25 / 40015624
bladder10 / 29757336
blood24 / 123478194
bone32 / 71655446
bone marrow24 / 48801491
brain354 / 1100989321
cervix15 / 48171311
connective tissue62 / 149255415
ear1 / 1621261
embryonic tissue164 / 215722760
esophagus3 / 20209148
eye119 / 211054563
heart51 / 89626569
intestine160 / 234472682
kidney104 / 211777491
larynx16 / 24145662
liver130 / 207743625
lung222 / 336974658
lymph30 / 44270677
lymph node54 / 91610589
mammary gland156 / 1532711017
mouth61 / 67052909
muscle100 / 107715928
nerve3 / 15768190
ovary88 / 102051862
pancreas153 / 214812712
parathyroid12 / 20539584
pharynx89 / 413282153
pituitary gland2 / 16585120
placenta131 / 280825466
prostate127 / 189345670
salivary gland15 / 20155744
skin176 / 210574835
spleen14 / 53952259
stomach86 / 96619890
testis414 / 3304421252
thymus12 / 81131147
thyroid31 / 47473653
tonsil3 / 16999176
trachea79 / 524131507
umbilical cord144 / 1368010526
uterus169 / 232878725
vascular87 / 517801680
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221767_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts202.35
Adipocyte200.9
AdrenalCortex133.4
Adrenalgland99.25
Amygdala87
Appendix20.65
AtrioventricularNode20.1
BDCA4+_DentriticCells92.2
Bonemarrow62.6
BronchialEpithelialCells224.5
CD105+_Endothelial98.05
CD14+_Monocytes91.35
CD19+_BCells(neg._sel.)62.5
CD33+_Myeloid112.7
CD34+93.05
CD4+_Tcells67.1
CD56+_NKCells78.65
CD71+_EarlyErythroid89.25
CD8+_Tcells52.25
CardiacMyocytes372.3
Caudatenucleus45.15
Cerebellum27.65
CerebellumPeduncles41.15
CiliaryGanglion35.9
CingulateCortex45.05
Colorectaladenocarcinoma189.7
DorsalRootGanglion36.1
FetalThyroid163.6
Fetalbrain42.65
Fetalliver85.95
Fetallung143.6
GlobusPallidus18.4
Heart96.2
Hypothalamus64.75
Kidney83.4
Leukemia_chronicMyelogenousK-562150.35
Leukemia_promyelocytic-HL-6061.55
Leukemialymphoblastic(MOLT-4)53.6
Liver210.45
Lung341.65
Lymphnode69.2
Lymphoma_burkitts(Daudi)84.65
Lymphoma_burkitts(Raji)357.35
MedullaOblongata25
OccipitalLobe30.95
OlfactoryBulb78.5
Ovary99.3
Pancreas194.15
PancreaticIslet318.2
ParietalLobe47
Pituitary142.6
Placenta181.7
Pons24.7
PrefrontalCortex90.05
Prostate483.45
Salivarygland159.65
SkeletalMuscle101.15
Skin57.75
SmoothMuscle444.95
Spinalcord78.55
SubthalamicNucleus24.45
SuperiorCervicalGanglion14.3
TemporalLobe26.3
Testis264.3
TestisGermCell191.35
TestisIntersitial258.5
TestisLeydigCell123.65
TestisSeminiferousTubule197.25
Thalamus56.65
Thymus67.35
Thyroid320.8
Tongue102
Tonsil69.6
Trachea121.65
TrigeminalGanglion27.05
Uterus191.3
UterusCorpus65.3
WholeBlood74.6
Wholebrain52.9
colon124.4
pineal_day92.74
pineal_night73.44
retina117.475
small_intestine148.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P131417
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.5 ± 0.35
Basal Forebrain8.74 ± 0.16
Basal Part of Pons9.04 ± 0.21
Cerebellar Cortex8.57 ± 0.17
Cerebellar Nuclei8.73 ± 0.27
Claustrum8.78 ± 0.21
Epithalamus9.14 ± 0.4
Frontal Lobe8.87 ± 0.25
Globus Pallidus8.95 ± 0.3
Hypothalamus8.82 ± 0.21
Insula8.8 ± 0.27
Limbic Lobe8.76 ± 0.33
Mesencephalon8.73 ± 0.27
Myelencephalon8.79 ± 0.3
Occipital Lobe8.53 ± 0.3
Parietal Lobe8.77 ± 0.26
Pontine Tegmentum8.75 ± 0.29
Striatum8.98 ± 0.24
Subthalamus8.76 ± 0.26
Temporal Lobe8.88 ± 0.28
Thalamus8.82 ± 0.22
White Matter8.93 ± 0.18
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
HdlbpCBCerebellum54.86
100
HdlbpCTXCerebral cortex100
100
HdlbpHIPHippocampal region100
100
HdlbpHPFHippocampal formation100
100
HdlbpHYHypothalamus100
100
HdlbpLSXLateral septal complex100
100
HdlbpMBMidbrain100
100
HdlbpMYMedulla91.98
100
HdlbpOLFOlfactory bulb100
100
HdlbpPPons92.08
100
HdlbpPALPallidum100
100
HdlbpRHPRetrohippocampal region100
100
HdlbpsAMYStriatum-like amygdalar nuclei100
100
HdlbpSTRStriatum100
100
HdlbpSTRdStriatum dorsal region100
100
HdlbpSTRvStriatum ventral region100
100
HdlbpTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00006523 10 947 956 RCDIIIISGR Peptide Atlas
VIGLN_HUMAN_1119 18 1119 1136 IVGELEQMVSEDVPLDHR PRIDE
VIGLN_HUMAN_1120 18 1120 1137 IVGELEQMVSEDVPLDHR PRIDE
VIGLN_HUMAN_146 13 146 158 LQTQASATVAIPK PRIDE
VIGLN_HUMAN_146 17 146 162 LQTQASATVAIPKEHHR PRIDE
VIGLN_HUMAN_2 15 2 16 SSVAVLTQESFAEHR PRIDE
VIGLN_HUMAN_207 15 207 221 ARHEVLLISAEQDKR PRIDE
VIGLN_HUMAN_243 12 243 254 LVGEIMQETGTR PRIDE
VIGLN_HUMAN_244 12 244 255 LVGEIMQETGTR PRIDE
VIGLN_HUMAN_408 22 408 429 ITLEGPTEDVNVAQEQIEGMVK PRIDE
VIGLN_HUMAN_521 9 521 529 TIIGQKGER PRIDE
VIGLN_HUMAN_887 9 887 895 SVMGPKGSR PRIDE
VIGLN_HUMAN_964 21 964 984 EALEALVPVTIEVEVPFDLHR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved