Annotation Detail for HELLS
Basic Information Top
| Gene Symbol: | HELLS ( FLJ10339,LSH,PASG,SMARCA6 ) |
|---|---|
| Gene Full Name: | helicase, lymphoid-specific |
| Band: | 10q23.33 |
| Quick Links | Entrez ID:3070; OMIM: 603946; Uniprot ID:HELLS_HUMAN; ENSEMBL ID: ENSG00000119969; HGNC ID: 4861 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655830
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 12 / 62319 | 192 |  |
| fetus | 28 / 564012 | 49 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 53 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 25 / 263845 | 94 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 27 / 95842 | 281 |  |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 95 / 3360307 | 28 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 26 / 48801 | 532 | |
| brain | 6 / 1100989 | 5 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 23 / 215722 | 106 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 2 / 89626 | 22 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 2 / 24145 | 82 | |
| liver | 11 / 207743 | 52 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 33 / 330442 | 99 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
- Probe name: CUST_11058_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.07 ± 0.6 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.86 ± 0.22 | |
| Basal Part of Pons | 4.41 ± 0.47 | |
| Cerebellar Cortex | 5.29 ± 0.33 | |
| Cerebellar Nuclei | 4.55 ± 0.45 | |
| Claustrum | 4.68 ± 0.77 | |
| Epithalamus | 4.54 ± 0.32 | |
| Frontal Lobe | 4.43 ± 0.56 | |
| Globus Pallidus | 4.62 ± 0.52 | |
| Hypothalamus | 4.77 ± 0.52 | |
| Insula | 4.65 ± 0.35 | |
| Limbic Lobe | 4.71 ± 0.53 | |
| Mesencephalon | 4.87 ± 0.65 | |
| Myelencephalon | 4.74 ± 0.56 | |
| Occipital Lobe | 5.03 ± 0.53 | |
| Parietal Lobe | 4.76 ± 0.55 | |
| Pontine Tegmentum | 4.63 ± 0.65 | |
| Striatum | 4.52 ± 0.49 | |
| Subthalamus | 5.08 ± 1.03 | |
| Temporal Lobe | 4.66 ± 0.51 | |
| Thalamus | 4.53 ± 0.45 | |
| White Matter | 5.26 ± 0.23 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005839 | 22 | 154 | 175 | NKKENEDENSSSTNLCVEDLQK | Peptide Atlas |