AutismKB 2.0

Annotation Detail for EMR2


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Basic Information Top
Gene Symbol:EMR2 ( CD312,DKFZp781B135 )
Gene Full Name: egf-like module containing, mucin-like, hormone receptor-like 2
Band: 19p13.1
Quick LinksEntrez ID:30817; OMIM: 606100; Uniprot ID:EMR2_HUMAN; ENSEMBL ID: ENSG00000127507; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult20 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal23 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood8 / 12347864
bone0 / 716550 
bone marrow5 / 48801102
brain3 / 11009892
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach0 / 966190 
testis1 / 3304423
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus6 / 23287825
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207610_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.15
Adipocyte4.95
AdrenalCortex5.45
Adrenalgland4.3
Amygdala5.25
Appendix5.1
AtrioventricularNode4.1
BDCA4+_DentriticCells75.15
Bonemarrow6.4
BronchialEpithelialCells4.95
CD105+_Endothelial5.2
CD14+_Monocytes123.65
CD19+_BCells(neg._sel.)5.3
CD33+_Myeloid36.7
CD34+7.4
CD4+_Tcells5.3
CD56+_NKCells45.5
CD71+_EarlyErythroid4.75
CD8+_Tcells4.75
CardiacMyocytes6.4
Caudatenucleus4.5
Cerebellum4.05
CerebellumPeduncles5.7
CiliaryGanglion3.75
CingulateCortex5.15
Colorectaladenocarcinoma5.05
DorsalRootGanglion4
FetalThyroid4.85
Fetalbrain5.05
Fetalliver4.35
Fetallung4.6
GlobusPallidus3.75
Heart6.45
Hypothalamus5.45
Kidney4.15
Leukemia_chronicMyelogenousK-5624.5
Leukemia_promyelocytic-HL-604.45
Leukemialymphoblastic(MOLT-4)3.95
Liver6.9
Lung5.75
Lymphnode4.4
Lymphoma_burkitts(Daudi)6.45
Lymphoma_burkitts(Raji)7.1
MedullaOblongata4.55
OccipitalLobe4.35
OlfactoryBulb3.95
Ovary3.4
Pancreas4.45
PancreaticIslet5.9
ParietalLobe5.35
Pituitary5.9
Placenta5.15
Pons4.75
PrefrontalCortex6.25
Prostate5.8
Salivarygland4
SkeletalMuscle6.25
Skin4.05
SmoothMuscle5.6
Spinalcord5.35
SubthalamicNucleus4.55
SuperiorCervicalGanglion6.1
TemporalLobe4.55
Testis4.25
TestisGermCell4.2
TestisIntersitial4.2
TestisLeydigCell4.95
TestisSeminiferousTubule4.25
Thalamus5.1
Thymus3.9
Thyroid6.1
Tongue4.95
Tonsil4.9
Trachea4.2
TrigeminalGanglion5.3
Uterus4.1
UterusCorpus4.6
WholeBlood389.4
Wholebrain4.2
colon5
pineal_day6.08
pineal_night5.96
retina6.075
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5080_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.48 ± 1.22
Basal Forebrain2.37 ± 0.6
Basal Part of Pons2.3 ± 0.68
Cerebellar Cortex1.77 ± 0.6
Cerebellar Nuclei2.7 ± 0.52
Claustrum2.92 ± 0.79
Epithalamus2.54 ± 0.5
Frontal Lobe2.1 ± 0.82
Globus Pallidus3.79 ± 0.47
Hypothalamus2.13 ± 0.93
Insula1.87 ± 0.62
Limbic Lobe2.17 ± 0.89
Mesencephalon2.38 ± 0.9
Myelencephalon2.3 ± 0.87
Occipital Lobe2.48 ± 0.88
Parietal Lobe2.18 ± 0.93
Pontine Tegmentum2.3 ± 0.93
Striatum2.79 ± 0.69
Subthalamus2.38 ± 0.33
Temporal Lobe2.05 ± 0.88
Thalamus2.23 ± 0.71
White Matter4.82 ± 0.27
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009870 25 207 231 DTVCEDMTFSTWTPPPGVHSQTLSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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