Annotation Detail for KCNIP3
Basic Information Top
| Gene Symbol: | KCNIP3 ( CSEN,DREAM,KCHIP3,MGC18289 ) |
|---|---|
| Gene Full Name: | Kv channel interacting protein 3, calsenilin |
| Band: | 2q11.1 |
| Quick Links | Entrez ID:30818; OMIM: 604662; Uniprot ID:CSEN_HUMAN; ENSEMBL ID: ENSG00000115041; HGNC ID: 15523 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.437376
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 3 / 23620 | 127 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 35 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 12 / 106883 | 112 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 64 / 3360307 | 19 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 59 / 1100989 | 53 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11026_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.9 ± 0.6 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.88 ± 0.63 | |
| Basal Part of Pons | 4.51 ± 0.53 | |
| Cerebellar Cortex | 4.51 ± 0.54 | |
| Cerebellar Nuclei | 4.79 ± 0.39 | |
| Claustrum | 5.08 ± 0.62 | |
| Epithalamus | 5.43 ± 0.46 | |
| Frontal Lobe | 5.29 ± 0.55 | |
| Globus Pallidus | 4.83 ± 0.7 | |
| Hypothalamus | 4.26 ± 0.66 | |
| Insula | 5.29 ± 0.39 | |
| Limbic Lobe | 5.68 ± 0.64 | |
| Mesencephalon | 5.07 ± 0.73 | |
| Myelencephalon | 5.18 ± 0.78 | |
| Occipital Lobe | 6 ± 0.76 | |
| Parietal Lobe | 5.48 ± 0.64 | |
| Pontine Tegmentum | 5.38 ± 0.64 | |
| Striatum | 4.3 ± 1.27 | |
| Subthalamus | 4.64 ± 0.55 | |
| Temporal Lobe | 5.41 ± 0.45 | |
| Thalamus | 4.64 ± 0.69 | |
| White Matter | 3.75 ± 0.62 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Kcnip3 | CB | Cerebellum | 51.81 | |
| 64.93 | | |||
| Kcnip3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Kcnip3 | HIP | Hippocampal region | 46.39 | |
| 76.72 | | |||
| Kcnip3 | HPF | Hippocampal formation | 70.28 | |
| 98.18 | | |||
| Kcnip3 | HY | Hypothalamus | 16.91 | |
| 13.73 | | |||
| Kcnip3 | LSX | Lateral septal complex | 39.79 | |
| 33.49 | | |||
| Kcnip3 | MB | Midbrain | 23.17 | |
| 19.83 | | |||
| Kcnip3 | MY | Medulla | 20.63 | |
| 20.15 | | |||
| Kcnip3 | OLF | Olfactory bulb | 96.5 | |
| 100 | | |||
| Kcnip3 | P | Pons | 24.99 | |
| 24.61 | | |||
| Kcnip3 | PAL | Pallidum | 22.32 | |
| 18.85 | | |||
| Kcnip3 | RHP | Retrohippocampal region | 95.74 | |
| 97.65 | | |||
| Kcnip3 | sAMY | Striatum-like amygdalar nuclei | 34.24 | |
| 25.98 | | |||
| Kcnip3 | STR | Striatum | 80.88 | |
| 72.61 | | |||
| Kcnip3 | STRd | Striatum dorsal region | 83.48 | |
| 76.97 | | |||
| Kcnip3 | STRv | Striatum ventral region | 89.12 | |
| 80.5 | | |||
| Kcnip3 | TH | Thalamus | 65.94 | |
| 67.12 | |