AutismKB 2.0

Annotation Detail for STOML2


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Basic Information Top
Gene Symbol:STOML2 ( SLP-2 )
Gene Full Name: stomatin (EPB72)-like 2
Band: 9p13.3
Quick LinksEntrez ID:30968; OMIM: 608292; Uniprot ID:STML2_HUMAN; ENSEMBL ID: ENSG00000165283; HGNC ID: 14559
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body16 / 70761226
blastocyst7 / 62319112
fetus55 / 56401297
neonate2 / 3109764
infant2 / 2362084
juvenile11 / 55556197
adult212 / 1939121109
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor3 / 12794234
bladder carcinoma0 / 174750 
breast (mammary gland) tumor33 / 94178350
cervical tumor5 / 34366145
chondrosarcoma5 / 8282360
colorectal tumor27 / 114246236
esophageal tumor1 / 1729057
gastrointestinal tumor29 / 119369242
germ cell tumor37 / 263845140
glioma22 / 106883205
head and neck tumor6 / 13630244
kidney tumor5 / 6895972
leukemia12 / 95842125
liver tumor27 / 96359280
lung tumor25 / 103127242
lymphoma8 / 71755111
non-neoplasia4 / 9725041
normal303 / 336030790
ovarian tumor12 / 76682156
pancreatic tumor55 / 104616525
primitive neuroectodermal tumor of the CNS40 / 125680318
prostate cancer23 / 102680223
retinoblastoma12 / 46356258
skin tumor45 / 124949360
soft tissue/muscle tissue tumor29 / 125191231
uterine tumor23 / 90257254
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites17 / 40015424
bladder1 / 2975733
blood16 / 123478129
bone14 / 71655195
bone marrow6 / 48801122
brain119 / 1100989108
cervix10 / 48171207
connective tissue2 / 14925513
ear3 / 16212185
embryonic tissue37 / 215722171
esophagus1 / 2020949
eye31 / 211054146
heart11 / 89626122
intestine42 / 234472179
kidney11 / 21177751
larynx2 / 2414582
liver41 / 207743197
lung49 / 336974145
lymph3 / 4427067
lymph node4 / 9161043
mammary gland37 / 153271241
mouth3 / 6705244
muscle22 / 107715204
nerve0 / 157680 
ovary20 / 102051195
pancreas71 / 214812330
parathyroid4 / 20539194
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta41 / 280825145
prostate31 / 189345163
salivary gland2 / 2015599
skin58 / 210574275
spleen2 / 5395237
stomach4 / 9661941
testis28 / 33044284
thymus4 / 8113149
thyroid1 / 4747321
tonsil3 / 16999176
trachea1 / 5241319
umbilical cord2 / 13680146
uterus48 / 232878206
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215416_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts604.65
Adipocyte33.55
AdrenalCortex11
Adrenalgland16.25
Amygdala8.4
Appendix10.95
AtrioventricularNode8.25
BDCA4+_DentriticCells90.05
Bonemarrow12.1
BronchialEpithelialCells258.8
CD105+_Endothelial258.85
CD14+_Monocytes17.45
CD19+_BCells(neg._sel.)43.6
CD33+_Myeloid14.05
CD34+124.9
CD4+_Tcells25.15
CD56+_NKCells26.5
CD71+_EarlyErythroid110.25
CD8+_Tcells24.15
CardiacMyocytes56.75
Caudatenucleus11.3
Cerebellum11.05
CerebellumPeduncles16.3
CiliaryGanglion7.75
CingulateCortex13.4
Colorectaladenocarcinoma233.85
DorsalRootGanglion9.3
FetalThyroid13.05
Fetalbrain12.55
Fetalliver15.5
Fetallung33.8
GlobusPallidus9.35
Heart357.05
Hypothalamus15.2
Kidney24.25
Leukemia_chronicMyelogenousK-56271.55
Leukemia_promyelocytic-HL-60125.45
Leukemialymphoblastic(MOLT-4)161.15
Liver22.05
Lung35.85
Lymphnode11.3
Lymphoma_burkitts(Daudi)246.65
Lymphoma_burkitts(Raji)59.3
MedullaOblongata11.4
OccipitalLobe11.7
OlfactoryBulb9.25
Ovary8.15
Pancreas10.55
PancreaticIslet16.75
ParietalLobe11.45
Pituitary17.05
Placenta15.1
Pons11.45
PrefrontalCortex14.5
Prostate41.5
Salivarygland10.25
SkeletalMuscle13.95
Skin8.45
SmoothMuscle48.7
Spinalcord12.65
SubthalamicNucleus11.5
SuperiorCervicalGanglion12.45
TemporalLobe11.5
Testis17.55
TestisGermCell14
TestisIntersitial12.8
TestisLeydigCell12.25
TestisSeminiferousTubule10.75
Thalamus17.8
Thymus45.75
Thyroid16.2
Tongue12.25
Tonsil12.95
Trachea10.45
TrigeminalGanglion10.5
Uterus9.2
UterusCorpus8.3
WholeBlood10.5
Wholebrain33
colon57.75
pineal_day17.3
pineal_night15.44
retina22
small_intestine88.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_9941_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.05 ± 0.6
Basal Forebrain4.57 ± 0.41
Basal Part of Pons5.32 ± 0.53
Cerebellar Cortex5.36 ± 0.49
Cerebellar Nuclei4.96 ± 0.47
Claustrum4.39 ± 0.84
Epithalamus5.4 ± 0.43
Frontal Lobe5.23 ± 0.52
Globus Pallidus4.48 ± 0.32
Hypothalamus5.21 ± 0.68
Insula5.23 ± 0.36
Limbic Lobe4.86 ± 0.62
Mesencephalon5.12 ± 0.58
Myelencephalon4.97 ± 0.62
Occipital Lobe4.56 ± 0.62
Parietal Lobe4.96 ± 0.54
Pontine Tegmentum4.88 ± 0.53
Striatum4.54 ± 0.44
Subthalamus4.5 ± 0.44
Temporal Lobe5.24 ± 0.51
Thalamus5.01 ± 0.5
White Matter4.28 ± 0.52
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Stoml2CBCerebellum21.39
32.3
Stoml2CTXCerebral cortex33.71
28.57
Stoml2HIPHippocampal region27.07
44.05
Stoml2HPFHippocampal formation35.59
42.64
Stoml2HYHypothalamus14.44
12.94
Stoml2LSXLateral septal complex10.69
9.18
Stoml2MBMidbrain30.83
32.87
Stoml2MYMedulla21.95
31.46
Stoml2OLFOlfactory bulb24.52
21.5
Stoml2PPons30.92
38.24
Stoml2PALPallidum14.9
16.4
Stoml2RHPRetrohippocampal region42.45
40.41
Stoml2sAMYStriatum-like amygdalar nuclei14.25
12.51
Stoml2STRStriatum10.28
8.91
Stoml2STRdStriatum dorsal region8.97
7.94
Stoml2STRvStriatum ventral region12.1
9.58
Stoml2THThalamus21.89
21.67
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00000716 21 115 135 ASYGVEDPEYAVTQLAQTTMR Peptide Atlas
STML2_HUMAN_0 0 0 0 ILEPGLNILIPVLDR PRIDE
STML2_HUMAN_115 21 115 135 ASYGVEDPEYAVTQLAQTTMR PRIDE
STML2_HUMAN_187 11 187 197 ESMQMQVEAER PRIDE
STML2_HUMAN_187 12 187 198 ESMQMQVEAERR PRIDE
STML2_HUMAN_188 11 188 198 ESMQMQVEAER PRIDE
STML2_HUMAN_201 21 201 221 ATVLESEGTRESAINVAEGKK PRIDE
STML2_HUMAN_57 15 57 71 ILEPGLNILIPVLDR PRIDE
STML2_HUMAN_57 17 57 73 ILEPGLNILIPVLDRIR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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