AutismKB 2.0

Annotation Detail for HMMR


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Basic Information Top
Gene Symbol:HMMR ( CD168,IHABP,MGC119494,MGC119495,RHAMM )
Gene Full Name: hyaluronan-mediated motility receptor (RHAMM)
Band: 5q34
Quick LinksEntrez ID:3161; OMIM: 600936; Uniprot ID:HMMR_HUMAN; ENSEMBL ID: ENSG00000072571; HGNC ID: 5012
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst5 / 6231980
fetus27 / 56401247
neonate2 / 3109764
infant1 / 2362042
juvenile0 / 555560 
adult58 / 193912129
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma4 / 17475228
breast (mammary gland) tumor6 / 9417863
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor10 / 11936983
germ cell tumor10 / 26384537
glioma4 / 10688337
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia7 / 9584273
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal99 / 336030729
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer3 / 10268029
retinoblastoma0 / 463560 
skin tumor7 / 12494956
soft tissue/muscle tissue tumor23 / 125191183
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites6 / 40015149
bladder4 / 29757134
blood5 / 12347840
bone0 / 716550 
bone marrow4 / 4880181
brain10 / 11009899
cervix0 / 481710 
connective tissue26 / 149255174
ear0 / 162120 
embryonic tissue17 / 21572278
esophagus1 / 2020949
eye3 / 21105414
heart0 / 896260 
intestine3 / 23447212
kidney7 / 21177733
larynx0 / 241450 
liver6 / 20774328
lung6 / 33697417
lymph0 / 442700 
lymph node8 / 9161087
mammary gland7 / 15327145
mouth2 / 6705229
muscle1 / 1077159
nerve1 / 1576863
ovary3 / 10205129
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate3 / 18934515
salivary gland1 / 2015549
skin10 / 21057447
spleen0 / 539520 
stomach3 / 9661931
testis36 / 330442108
thymus13 / 81131160
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209709_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts296.05
Adipocyte4.1
AdrenalCortex4.3
Adrenalgland3.45
Amygdala4.3
Appendix4.6
AtrioventricularNode3.15
BDCA4+_DentriticCells4.5
Bonemarrow4.05
BronchialEpithelialCells3.95
CD105+_Endothelial150.25
CD14+_Monocytes4.3
CD19+_BCells(neg._sel.)4.2
CD33+_Myeloid5.3
CD34+34.45
CD4+_Tcells4.35
CD56+_NKCells4.75
CD71+_EarlyErythroid145.95
CD8+_Tcells3.9
CardiacMyocytes8.4
Caudatenucleus3.6
Cerebellum3.3
CerebellumPeduncles4.65
CiliaryGanglion2.8
CingulateCortex4.2
Colorectaladenocarcinoma4.8
DorsalRootGanglion3.15
FetalThyroid3.95
Fetalbrain4.05
Fetalliver7
Fetallung3.35
GlobusPallidus2.95
Heart5.2
Hypothalamus4.45
Kidney3.4
Leukemia_chronicMyelogenousK-56222.8
Leukemia_promyelocytic-HL-6067.85
Leukemialymphoblastic(MOLT-4)7.6
Liver5.4
Lung4.45
Lymphnode3.5
Lymphoma_burkitts(Daudi)74.5
Lymphoma_burkitts(Raji)5.85
MedullaOblongata3.75
OccipitalLobe3.65
OlfactoryBulb3.2
Ovary2.65
Pancreas3.25
PancreaticIslet4.35
ParietalLobe4.35
Pituitary4.75
Placenta4.2
Pons3.85
PrefrontalCortex5.1
Prostate4.7
Salivarygland3.3
SkeletalMuscle4.85
Skin3.1
SmoothMuscle4.6
Spinalcord4.3
SubthalamicNucleus3.7
SuperiorCervicalGanglion5.25
TemporalLobe3.75
Testis3.5
TestisGermCell9.6
TestisIntersitial4.6
TestisLeydigCell4.05
TestisSeminiferousTubule4.25
Thalamus4.1
Thymus3.2
Thyroid5.05
Tongue4.05
Tonsil3.95
Trachea3.4
TrigeminalGanglion4.2
Uterus3.35
UterusCorpus3.7
WholeBlood4.4
Wholebrain3.5
colon4.05
pineal_day5.08
pineal_night4.96
retina4.9
small_intestine3.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P70007
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.7 ± 1.13
Basal Forebrain2.41 ± 0.23
Basal Part of Pons2.41 ± 0.75
Cerebellar Cortex2.19 ± 0.69
Cerebellar Nuclei2.88 ± 0.45
Claustrum3.03 ± 0.71
Epithalamus2.06 ± 0.83
Frontal Lobe2.61 ± 0.78
Globus Pallidus3.11 ± 0.68
Hypothalamus2.46 ± 0.75
Insula2.03 ± 0.65
Limbic Lobe2.35 ± 0.64
Mesencephalon2.68 ± 0.65
Myelencephalon2.52 ± 0.65
Occipital Lobe2.34 ± 0.64
Parietal Lobe2.63 ± 0.67
Pontine Tegmentum2.57 ± 0.7
Striatum2.34 ± 0.54
Subthalamus2.71 ± 0.96
Temporal Lobe2.38 ± 0.73
Thalamus2.45 ± 0.63
White Matter3.99 ± 0.5
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HMMR_HUMAN_11 17 11 27 FNDPSGCAPSPGAYDVK PRIDE
HMMR_HUMAN_697 10 697 706 ENFALKTPLK PRIDE
PAp00010105 17 11 27 FNDPSGCAPSPGAYDVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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