AutismKB 2.0

Annotation Detail for HNRNPD


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Basic Information Top
Gene Symbol:HNRNPD ( AUF1,AUF1A,HNRPD,P37,hnRNPD0 )
Gene Full Name: heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
Band: 4q21.22
Quick LinksEntrez ID:3184; OMIM: 601324; Uniprot ID:HNRPD_HUMAN; ENSEMBL ID: ENSG00000138668; HGNC ID: 5036
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body19 / 70761268
blastocyst27 / 62319433
fetus82 / 564012145
neonate6 / 31097192
infant8 / 23620338
juvenile5 / 5555689
adult342 / 1939121176
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor8 / 12794625
bladder carcinoma4 / 17475228
breast (mammary gland) tumor19 / 94178201
cervical tumor2 / 3436658
chondrosarcoma19 / 82823229
colorectal tumor22 / 114246192
esophageal tumor0 / 172900 
gastrointestinal tumor22 / 119369184
germ cell tumor42 / 263845159
glioma22 / 106883205
head and neck tumor20 / 136302146
kidney tumor11 / 68959159
leukemia19 / 95842198
liver tumor19 / 96359197
lung tumor20 / 103127193
lymphoma12 / 71755167
non-neoplasia13 / 97250133
normal487 / 3360307144
ovarian tumor19 / 76682247
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS26 / 125680206
prostate cancer22 / 102680214
retinoblastoma7 / 46356151
skin tumor18 / 124949144
soft tissue/muscle tissue tumor30 / 125191239
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland12 / 33197361
ascites8 / 40015199
bladder6 / 29757201
blood14 / 123478113
bone26 / 71655362
bone marrow5 / 48801102
brain104 / 110098994
cervix4 / 4817183
connective tissue12 / 14925580
ear11 / 16212678
embryonic tissue88 / 215722407
esophagus0 / 202090 
eye33 / 211054156
heart15 / 89626167
intestine41 / 234472174
kidney20 / 21177794
larynx3 / 24145124
liver40 / 207743192
lung56 / 336974166
lymph4 / 4427090
lymph node30 / 91610327
mammary gland30 / 153271195
mouth8 / 67052119
muscle28 / 107715259
nerve0 / 157680 
ovary24 / 102051235
pancreas16 / 21481274
parathyroid2 / 2053997
pharynx9 / 41328217
pituitary gland3 / 16585180
placenta49 / 280825174
prostate28 / 189345147
salivary gland0 / 201550 
skin27 / 210574128
spleen5 / 5395292
stomach17 / 96619175
testis25 / 33044275
thymus28 / 81131345
thyroid10 / 47473210
tonsil5 / 16999294
trachea5 / 5241395
umbilical cord2 / 13680146
uterus36 / 232878154
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221480_at
Cell line Expression level Expression bar
721_B_lymphoblasts16.35
Adipocyte12.1
AdrenalCortex17.4
Adrenalgland12.95
Amygdala23.1
Appendix31.3
AtrioventricularNode18.3
BDCA4+_DentriticCells13
Bonemarrow16
BronchialEpithelialCells13.5
CD105+_Endothelial41.35
CD14+_Monocytes14.85
CD19+_BCells(neg._sel.)21.55
CD33+_Myeloid16.95
CD34+28.2
CD4+_Tcells15.75
CD56+_NKCells17.35
CD71+_EarlyErythroid14.75
CD8+_Tcells13.4
CardiacMyocytes27.75
Caudatenucleus12.4
Cerebellum12.7
CerebellumPeduncles24
CiliaryGanglion18.15
CingulateCortex16.65
Colorectaladenocarcinoma15
DorsalRootGanglion16.7
FetalThyroid15.65
Fetalbrain14.65
Fetalliver11.65
Fetallung10.3
GlobusPallidus13.35
Heart24.85
Hypothalamus14.6
Kidney13.2
Leukemia_chronicMyelogenousK-56211.8
Leukemia_promyelocytic-HL-6013.2
Leukemialymphoblastic(MOLT-4)12.9
Liver18.85
Lung14.3
Lymphnode8.9
Lymphoma_burkitts(Daudi)20.35
Lymphoma_burkitts(Raji)23.9
MedullaOblongata14.5
OccipitalLobe13.2
OlfactoryBulb11.3
Ovary18.1
Pancreas11.8
PancreaticIslet15.25
ParietalLobe17.4
Pituitary15.9
Placenta11.95
Pons18.2
PrefrontalCortex18.45
Prostate16.6
Salivarygland13
SkeletalMuscle30.4
Skin14
SmoothMuscle15.1
Spinalcord16.15
SubthalamicNucleus17.1
SuperiorCervicalGanglion30.2
TemporalLobe15.2
Testis11.75
TestisGermCell10.2
TestisIntersitial13
TestisLeydigCell17.4
TestisSeminiferousTubule11.85
Thalamus16.5
Thymus10.15
Thyroid18.95
Tongue24.45
Tonsil15
Trachea11.7
TrigeminalGanglion25.55
Uterus14.3
UterusCorpus15.55
WholeBlood15.4
Wholebrain12.2
colon16.4
pineal_day28.22
pineal_night24.06
retina22.275
small_intestine18.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P226037
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.07 ± 0.41
Basal Forebrain6.92 ± 0.25
Basal Part of Pons7.23 ± 0.24
Cerebellar Cortex7.38 ± 0.18
Cerebellar Nuclei7.02 ± 0.39
Claustrum6.97 ± 0.37
Epithalamus7.24 ± 0.35
Frontal Lobe7.09 ± 0.27
Globus Pallidus6.83 ± 0.19
Hypothalamus7.14 ± 0.29
Insula7.23 ± 0.24
Limbic Lobe7.02 ± 0.3
Mesencephalon6.9 ± 0.35
Myelencephalon7.02 ± 0.29
Occipital Lobe6.92 ± 0.35
Parietal Lobe7.14 ± 0.26
Pontine Tegmentum7.08 ± 0.4
Striatum6.77 ± 0.23
Subthalamus7.13 ± 0.11
Temporal Lobe7.09 ± 0.29
Thalamus7.03 ± 0.24
White Matter6.8 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
HnrpdCBCerebellum61.5
100
HnrpdCTXCerebral cortex100
100
HnrpdHIPHippocampal region100
100
HnrpdHPFHippocampal formation100
100
HnrpdHYHypothalamus100
100
HnrpdLSXLateral septal complex100
100
HnrpdMBMidbrain100
100
HnrpdMYMedulla81.31
100
HnrpdOLFOlfactory bulb100
100
HnrpdPPons100
100
HnrpdPALPallidum100
100
HnrpdRHPRetrohippocampal region100
100
HnrpdsAMYStriatum-like amygdalar nuclei100
100
HnrpdSTRStriatum100
100
HnrpdSTRdStriatum dorsal region100
100
HnrpdSTRvStriatum ventral region100
100
HnrpdTHThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HNRPD_HUMAN_0 0 0 0 FGEVVDCTLK PRIDE
HNRPD_HUMAN_0 0 0 0 IFVGGLSPDTPEEK PRIDE
HNRPD_HUMAN_0 0 0 0 MFIGGLSWDTTKK PRIDE
HNRPD_HUMAN_119 10 119 128 FGEVVDCTLK PRIDE
HNRPD_HUMAN_119 17 119 135 FGEVVDCTLKLDPITGR PRIDE
HNRPD_HUMAN_138 8 138 145 GFGFVLFK PRIDE
HNRPD_HUMAN_146 12 146 157 ESESVDKVMDQK PRIDE
HNRPD_HUMAN_183 14 183 196 IFVGGLSPDTPEEK PRIDE
HNRPD_HUMAN_183 16 183 198 IFVGGLSPDTPEEKIR PRIDE
HNRPD_HUMAN_223 15 223 237 GFCFITFKEEEPVKK PRIDE
HNRPD_HUMAN_333 12 333 344 SNQQSGYGKVSR PRIDE
HNRPD_HUMAN_98 12 98 109 MFIGGLSWDTTK PRIDE
HNRPD_HUMAN_98 13 98 110 MFIGGLSWDTTKK PRIDE
PAp00002407 10 101 110 FGEVVDCTLK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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