AutismKB 2.0

Annotation Detail for HNRNPF


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Basic Information Top
Gene Symbol:HNRNPF ( HNRPF,MGC110997,OK/SW-cl.23,mcs94-1 )
Gene Full Name: heterogeneous nuclear ribonucleoprotein F
Band: 10q11.21
Quick LinksEntrez ID:3185; OMIM: 601037; Uniprot ID:HNRPF_HUMAN; ENSEMBL ID: ENSG00000169813; HGNC ID: 5039
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body18 / 70761254
blastocyst20 / 62319320
fetus98 / 564012173
neonate38 / 310971221
infant11 / 23620465
juvenile53 / 55556953
adult410 / 1939121211
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma4 / 17475228
breast (mammary gland) tumor24 / 94178254
cervical tumor15 / 34366436
chondrosarcoma11 / 82823132
colorectal tumor61 / 114246533
esophageal tumor9 / 17290520
gastrointestinal tumor54 / 119369452
germ cell tumor117 / 263845443
glioma15 / 106883140
head and neck tumor39 / 136302286
kidney tumor17 / 68959246
leukemia34 / 95842354
liver tumor46 / 96359477
lung tumor31 / 103127300
lymphoma28 / 71755390
non-neoplasia19 / 97250195
normal867 / 3360307258
ovarian tumor17 / 76682221
pancreatic tumor26 / 104616248
primitive neuroectodermal tumor of the CNS46 / 125680366
prostate cancer21 / 102680204
retinoblastoma25 / 46356539
skin tumor28 / 124949224
soft tissue/muscle tissue tumor23 / 125191183
uterine tumor30 / 90257332
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland7 / 33197210
ascites28 / 40015699
bladder30 / 297571008
blood54 / 123478437
bone11 / 71655153
bone marrow22 / 48801450
brain222 / 1100989201
cervix17 / 48171352
connective tissue35 / 149255234
ear1 / 1621261
embryonic tissue54 / 215722250
esophagus10 / 20209494
eye55 / 211054260
heart21 / 89626234
intestine112 / 234472477
kidney55 / 211777259
larynx9 / 24145372
liver56 / 207743269
lung95 / 336974281
lymph18 / 44270406
lymph node11 / 91610120
mammary gland34 / 153271221
mouth22 / 67052328
muscle5 / 10771546
nerve8 / 15768507
ovary17 / 102051166
pancreas43 / 214812200
parathyroid0 / 205390 
pharynx13 / 41328314
pituitary gland1 / 1658560
placenta77 / 280825274
prostate40 / 189345211
salivary gland22 / 201551091
skin79 / 210574375
spleen37 / 53952685
stomach25 / 96619258
testis119 / 330442360
thymus85 / 811311047
thyroid13 / 47473273
tonsil12 / 16999705
trachea27 / 52413515
umbilical cord3 / 13680219
uterus84 / 232878360
vascular39 / 51780753
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201376_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts750.95
Adipocyte47.35
AdrenalCortex26.7
Adrenalgland38.4
Amygdala20.5
Appendix28.1
AtrioventricularNode24.65
BDCA4+_DentriticCells303.3
Bonemarrow79.55
BronchialEpithelialCells268.65
CD105+_Endothelial256.55
CD14+_Monocytes255.3
CD19+_BCells(neg._sel.)194.3
CD33+_Myeloid295.85
CD34+434.15
CD4+_Tcells240.7
CD56+_NKCells428.2
CD71+_EarlyErythroid159.5
CD8+_Tcells201.75
CardiacMyocytes93.25
Caudatenucleus29.65
Cerebellum24.5
CerebellumPeduncles73.9
CiliaryGanglion38.4
CingulateCortex16.2
Colorectaladenocarcinoma161.9
DorsalRootGanglion16.4
FetalThyroid28.05
Fetalbrain31.05
Fetalliver46.2
Fetallung72.95
GlobusPallidus17.05
Heart28.7
Hypothalamus30.75
Kidney44.45
Leukemia_chronicMyelogenousK-562149.15
Leukemia_promyelocytic-HL-6096.55
Leukemialymphoblastic(MOLT-4)190.65
Liver40
Lung58.25
Lymphnode73.35
Lymphoma_burkitts(Daudi)404.7
Lymphoma_burkitts(Raji)50.85
MedullaOblongata30.15
OccipitalLobe22.45
OlfactoryBulb22
Ovary24.9
Pancreas63.25
PancreaticIslet60.1
ParietalLobe25.75
Pituitary30.75
Placenta72.65
Pons30.1
PrefrontalCortex20.55
Prostate131
Salivarygland33.25
SkeletalMuscle31.85
Skin21.65
SmoothMuscle89.45
Spinalcord25.4
SubthalamicNucleus27.75
SuperiorCervicalGanglion25.35
TemporalLobe33.4
Testis106
TestisGermCell65.7
TestisIntersitial80.35
TestisLeydigCell81.2
TestisSeminiferousTubule56.4
Thalamus43.8
Thymus157.55
Thyroid42.2
Tongue26.75
Tonsil94.95
Trachea43.5
TrigeminalGanglion28.65
Uterus56.3
UterusCorpus21.5
WholeBlood214.45
Wholebrain17.55
colon60.3
pineal_day106
pineal_night86.7
retina54.35
small_intestine124.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P75330
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.9 ± 0.32
Basal Forebrain7.07 ± 0.21
Basal Part of Pons6.89 ± 0.28
Cerebellar Cortex7.22 ± 0.16
Cerebellar Nuclei7.51 ± 0.44
Claustrum7.07 ± 0.59
Epithalamus8.1 ± 0.45
Frontal Lobe6.82 ± 0.38
Globus Pallidus7.56 ± 0.41
Hypothalamus6.93 ± 0.39
Insula6.8 ± 0.27
Limbic Lobe6.81 ± 0.35
Mesencephalon6.98 ± 0.33
Myelencephalon7.01 ± 0.43
Occipital Lobe7.26 ± 0.39
Parietal Lobe6.91 ± 0.35
Pontine Tegmentum7.06 ± 0.5
Striatum7.03 ± 0.55
Subthalamus7.09 ± 0.18
Temporal Lobe6.84 ± 0.4
Thalamus7.11 ± 0.28
White Matter8.37 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
HnrpfCBCerebellum22.51
37
HnrpfCTXCerebral cortex55.01
44.28
HnrpfHIPHippocampal region40.85
57.53
HnrpfHPFHippocampal formation41.41
48.87
HnrpfHYHypothalamus15.13
12.12
HnrpfLSXLateral septal complex26.4
22.72
HnrpfMBMidbrain14.73
15.14
HnrpfMYMedulla20.62
26.66
HnrpfOLFOlfactory bulb43.51
39.73
HnrpfPPons16.94
20.27
HnrpfPALPallidum13.97
13.54
HnrpfRHPRetrohippocampal region45.08
37.76
HnrpfsAMYStriatum-like amygdalar nuclei36.04
28.62
HnrpfSTRStriatum23.65
18.54
HnrpfSTRdStriatum dorsal region20.56
16.13
HnrpfSTRvStriatum ventral region25.03
18.27
HnrpfTHThalamus19.68
17.7
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
HNRPF_HUMAN_0 0 0 0 ITGEAFVQFASQELAEK PRIDE
HNRPF_HUMAN_1 13 1 13 MLGPEGGEGFVVK PRIDE
HNRPF_HUMAN_1 15 1 15 MLGPEGGEGFVVKLR PRIDE
HNRPF_HUMAN_1 16 1 16 MMLGPEGGEGFVVKLR PRIDE
HNRPF_HUMAN_150 17 150 166 ITGEAFVQFASQELAEK PRIDE
HNRPF_HUMAN_193 14 193 206 SYSDPPLKFMSVQR PRIDE
HNRPF_HUMAN_2 15 2 16 MLGPEGGEGFVVKLR PRIDE
HNRPF_HUMAN_200 17 200 216 FMSVQRPGPYDRPGTAR PRIDE
HNRPF_HUMAN_262 13 262 274 DLSYCLSGMYDHR PRIDE
HNRPF_HUMAN_275 19 275 293 YGDSEFTVQSTTGHCVHMR PRIDE
HNRPF_HUMAN_299 17 299 315 ATENDIYNFFSPLNPVR PRIDE
HNRPF_HUMAN_316 10 316 325 VHIEIGPDGR PRIDE
HNRPF_HUMAN_326 21 326 346 VTGEADVEFATHEEAVAAMSK PRIDE
HNRPF_HUMAN_52 16 52 67 QSGEAFVELGSEDDVK PRIDE
HNRPF_HUMAN_98 16 98 113 HSGPNSADSANDGFVR PRIDE
PAp00001731 13 263 275 DLSYCLSGMYDHR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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