Annotation Detail for HSPG2


Gene Symbol: | HSPG2 ( PLC,PRCAN,SJA,SJS,SJS1 ) |
---|---|
Gene Full Name: | heparan sulfate proteoglycan 2 |
Band: | 1p36.12 |
Quick Links | Entrez ID:3339; OMIM: 142461; Uniprot ID:PGBM_HUMAN; ENSEMBL ID: ENSG00000142798; HGNC ID: 5273 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.562227
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 29 / 70761 | 409 | ![]() |
blastocyst | 9 / 62319 | 144 | ![]() |
fetus | 26 / 564012 | 46 | ![]() |
neonate | 1 / 31097 | 32 | ![]() |
infant | 0 / 23620 | 0 | |
juvenile | 9 / 55556 | 161 | ![]() |
adult | 210 / 1939121 | 108 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 2 / 12794 | 156 | ![]() |
bladder carcinoma | 6 / 17475 | 343 | ![]() |
breast (mammary gland) tumor | 5 / 94178 | 53 | ![]() |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 7 / 82823 | 84 | ![]() |
colorectal tumor | 26 / 114246 | 227 | ![]() |
esophageal tumor | 2 / 17290 | 115 | ![]() |
gastrointestinal tumor | 11 / 119369 | 92 | ![]() |
germ cell tumor | 10 / 263845 | 37 | ![]() |
glioma | 6 / 106883 | 56 | ![]() |
head and neck tumor | 10 / 136302 | 73 | ![]() |
kidney tumor | 10 / 68959 | 145 | ![]() |
leukemia | 2 / 95842 | 20 | ![]() |
liver tumor | 6 / 96359 | 62 | ![]() |
lung tumor | 12 / 103127 | 116 | ![]() |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 8 / 97250 | 82 | ![]() |
normal | 277 / 3360307 | 82 | ![]() |
ovarian tumor | 7 / 76682 | 91 | ![]() |
pancreatic tumor | 28 / 104616 | 267 | ![]() |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 10 / 102680 | 97 | ![]() |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 27 / 124949 | 216 | ![]() |
soft tissue/muscle tissue tumor | 14 / 125191 | 111 | ![]() |
uterine tumor | 32 / 90257 | 354 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 6 / 13106 | 457 | ![]() |
adrenal gland | 2 / 33197 | 60 | ![]() |
ascites | 1 / 40015 | 24 | ![]() |
bladder | 6 / 29757 | 201 | ![]() |
blood | 2 / 123478 | 16 | ![]() |
bone | 10 / 71655 | 139 | ![]() |
bone marrow | 0 / 48801 | 0 | |
brain | 32 / 1100989 | 29 | ![]() |
cervix | 0 / 48171 | 0 | |
connective tissue | 7 / 149255 | 46 | ![]() |
ear | 0 / 16212 | 0 | |
embryonic tissue | 50 / 215722 | 231 | ![]() |
esophagus | 2 / 20209 | 98 | ![]() |
eye | 19 / 211054 | 90 | ![]() |
heart | 10 / 89626 | 111 | ![]() |
intestine | 35 / 234472 | 149 | ![]() |
kidney | 16 / 211777 | 75 | ![]() |
larynx | 2 / 24145 | 82 | ![]() |
liver | 8 / 207743 | 38 | ![]() |
lung | 30 / 336974 | 89 | ![]() |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 12 / 153271 | 78 | ![]() |
mouth | 7 / 67052 | 104 | ![]() |
muscle | 20 / 107715 | 185 | ![]() |
nerve | 13 / 15768 | 824 | ![]() |
ovary | 10 / 102051 | 97 | ![]() |
pancreas | 36 / 214812 | 167 | ![]() |
parathyroid | 0 / 20539 | 0 | |
pharynx | 2 / 41328 | 48 | ![]() |
pituitary gland | 0 / 16585 | 0 | |
placenta | 31 / 280825 | 110 | ![]() |
prostate | 18 / 189345 | 95 | ![]() |
salivary gland | 0 / 20155 | 0 | |
skin | 34 / 210574 | 161 | ![]() |
spleen | 4 / 53952 | 74 | ![]() |
stomach | 16 / 96619 | 165 | ![]() |
testis | 11 / 330442 | 33 | ![]() |
thymus | 1 / 81131 | 12 | ![]() |
thyroid | 7 / 47473 | 147 | ![]() |
tonsil | 0 / 16999 | 0 | |
trachea | 10 / 52413 | 190 | ![]() |
umbilical cord | 0 / 13680 | 0 | |
uterus | 50 / 232878 | 214 | ![]() |
vascular | 6 / 51780 | 115 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 201655_s_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 10.5 | ![]() |
Adipocyte | 379.15 | ![]() |
AdrenalCortex | 196.8 | ![]() |
Adrenalgland | 168.25 | ![]() |
Amygdala | 8.6 | ![]() |
Appendix | 118.55 | ![]() |
AtrioventricularNode | 41.95 | ![]() |
BDCA4+_DentriticCells | 10.25 | ![]() |
Bonemarrow | 9.65 | ![]() |
BronchialEpithelialCells | 32.1 | ![]() |
CD105+_Endothelial | 8.7 | ![]() |
CD14+_Monocytes | 9.9 | ![]() |
CD19+_BCells(neg._sel.) | 9.45 | ![]() |
CD33+_Myeloid | 10.9 | ![]() |
CD34+ | 26.9 | ![]() |
CD4+_Tcells | 9.25 | ![]() |
CD56+_NKCells | 10.5 | ![]() |
CD71+_EarlyErythroid | 11.5 | ![]() |
CD8+_Tcells | 8.05 | ![]() |
CardiacMyocytes | 299.5 | ![]() |
Caudatenucleus | 8.2 | ![]() |
Cerebellum | 7.45 | ![]() |
CerebellumPeduncles | 10.9 | ![]() |
CiliaryGanglion | 65.7 | ![]() |
CingulateCortex | 9.5 | ![]() |
Colorectaladenocarcinoma | 17.6 | ![]() |
DorsalRootGanglion | 152.55 | ![]() |
FetalThyroid | 531.9 | ![]() |
Fetalbrain | 12.25 | ![]() |
Fetalliver | 13 | ![]() |
Fetallung | 162.4 | ![]() |
GlobusPallidus | 7.8 | ![]() |
Heart | 431.9 | ![]() |
Hypothalamus | 9.2 | ![]() |
Kidney | 42.75 | ![]() |
Leukemia_chronicMyelogenousK-562 | 53.55 | ![]() |
Leukemia_promyelocytic-HL-60 | 7.9 | ![]() |
Leukemialymphoblastic(MOLT-4) | 7.1 | ![]() |
Liver | 76.6 | ![]() |
Lung | 306.55 | ![]() |
Lymphnode | 52.95 | ![]() |
Lymphoma_burkitts(Daudi) | 12 | ![]() |
Lymphoma_burkitts(Raji) | 12.05 | ![]() |
MedullaOblongata | 8 | ![]() |
OccipitalLobe | 8.1 | ![]() |
OlfactoryBulb | 348.75 | ![]() |
Ovary | 14.85 | ![]() |
Pancreas | 35.95 | ![]() |
PancreaticIslet | 57.95 | ![]() |
ParietalLobe | 10.1 | ![]() |
Pituitary | 16.55 | ![]() |
Placenta | 247.15 | ![]() |
Pons | 13.7 | ![]() |
PrefrontalCortex | 10.9 | ![]() |
Prostate | 243.95 | ![]() |
Salivarygland | 7.6 | ![]() |
SkeletalMuscle | 32.2 | ![]() |
Skin | 20.4 | ![]() |
SmoothMuscle | 621.45 | ![]() |
Spinalcord | 29.05 | ![]() |
SubthalamicNucleus | 19.35 | ![]() |
SuperiorCervicalGanglion | 15.85 | ![]() |
TemporalLobe | 14.65 | ![]() |
Testis | 13.35 | ![]() |
TestisGermCell | 40.1 | ![]() |
TestisIntersitial | 18.7 | ![]() |
TestisLeydigCell | 23.45 | ![]() |
TestisSeminiferousTubule | 14.6 | ![]() |
Thalamus | 26.3 | ![]() |
Thymus | 61.3 | ![]() |
Thyroid | 278.6 | ![]() |
Tongue | 20.8 | ![]() |
Tonsil | 22.15 | ![]() |
Trachea | 41.05 | ![]() |
TrigeminalGanglion | 57.4 | ![]() |
Uterus | 404.1 | ![]() |
UterusCorpus | 27.1 | ![]() |
WholeBlood | 8.85 | ![]() |
Wholebrain | 6.7 | ![]() |
colon | 73.95 | ![]() |
pineal_day | 11.28 | ![]() |
pineal_night | 12.18 | ![]() |
retina | 97.95 | ![]() |
small_intestine | 56.25 | ![]() |
- Probe name: CUST_338_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 1.95 ± 1.03 | ![]() ![]() ![]() |
Basal Forebrain | 1.59 ± 0.35 | ![]() ![]() ![]() |
Basal Part of Pons | 1.19 ± 0.41 | ![]() ![]() ![]() |
Cerebellar Cortex | 1.35 ± 0.71 | ![]() ![]() ![]() |
Cerebellar Nuclei | 1.79 ± 0.73 | ![]() ![]() ![]() |
Claustrum | 2.28 ± 0.77 | ![]() ![]() ![]() |
Epithalamus | 1.23 ± 0.74 | ![]() ![]() ![]() |
Frontal Lobe | 1.37 ± 0.62 | ![]() ![]() ![]() |
Globus Pallidus | 2.18 ± 0.34 | ![]() ![]() ![]() |
Hypothalamus | 1.67 ± 0.8 | ![]() ![]() ![]() |
Insula | 1.46 ± 0.57 | ![]() ![]() ![]() |
Limbic Lobe | 1.52 ± 0.72 | ![]() ![]() ![]() |
Mesencephalon | 1.7 ± 0.78 | ![]() ![]() ![]() |
Myelencephalon | 1.55 ± 0.67 | ![]() ![]() ![]() |
Occipital Lobe | 1.48 ± 0.53 | ![]() ![]() ![]() |
Parietal Lobe | 1.58 ± 0.77 | ![]() ![]() ![]() |
Pontine Tegmentum | 1.56 ± 0.62 | ![]() ![]() ![]() |
Striatum | 1.67 ± 0.48 | ![]() ![]() ![]() |
Subthalamus | 1.61 ± 0.61 | ![]() ![]() ![]() |
Temporal Lobe | 1.44 ± 0.66 | ![]() ![]() ![]() |
Thalamus | 1.51 ± 0.6 | ![]() ![]() ![]() |
White Matter | 2.29 ± 0.69 | ![]() ![]() ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00000304 | 10 | 3652 | 3661 | AFAHLQVPER | Peptide Atlas |
PGBM_HUMAN_3258 | 10 | 3258 | 3267 | LEGDTLIIPR | PRIDE |