Annotation Detail for CCDC84
Basic Information Top
| Gene Symbol: | CCDC84 ( - ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 84 |
| Band: | 11q23.3 |
| Quick Links | Entrez ID:338657; OMIM: NA; Uniprot ID:CCD84_HUMAN; ENSEMBL ID: ENSG00000186166; HGNC ID: 30460 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.534613
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 63 / 1939121 | 32 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 8 / 114246 | 70 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 82 / 3360307 | 24 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 11 / 211054 | 52 | |
| heart | 0 / 89626 | 0 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 27 / 336974 | 80 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 6 / 189345 | 31 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_161_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.03 ± 0.32 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.02 ± 0.22 | |
| Basal Part of Pons | 7 ± 0.17 | |
| Cerebellar Cortex | 7.17 ± 0.23 | |
| Cerebellar Nuclei | 6.77 ± 0.31 | |
| Claustrum | 7.08 ± 0.26 | |
| Epithalamus | 6.91 ± 0.31 | |
| Frontal Lobe | 6.79 ± 0.28 | |
| Globus Pallidus | 6.85 ± 0.28 | |
| Hypothalamus | 6.72 ± 0.16 | |
| Insula | 6.8 ± 0.32 | |
| Limbic Lobe | 7.05 ± 0.35 | |
| Mesencephalon | 6.89 ± 0.38 | |
| Myelencephalon | 6.93 ± 0.31 | |
| Occipital Lobe | 7.29 ± 0.34 | |
| Parietal Lobe | 7 ± 0.29 | |
| Pontine Tegmentum | 6.85 ± 0.36 | |
| Striatum | 7.06 ± 0.33 | |
| Subthalamus | 6.78 ± 0.33 | |
| Temporal Lobe | 6.87 ± 0.28 | |
| Thalamus | 6.81 ± 0.29 | |
| White Matter | 7.76 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc84 | CB | Cerebellum | 13.35 | |
| 16.66 | | |||
| Ccdc84 | CTX | Cerebral cortex | 19.02 | |
| 13.75 | | |||
| Ccdc84 | HIP | Hippocampal region | 14.94 | |
| 16.83 | | |||
| Ccdc84 | HPF | Hippocampal formation | 18.65 | |
| 18.03 | | |||
| Ccdc84 | HY | Hypothalamus | 4.6 | |
| 3.67 | | |||
| Ccdc84 | LSX | Lateral septal complex | 2.65 | |
| 1.58 | | |||
| Ccdc84 | MB | Midbrain | 10.11 | |
| 9.18 | | |||
| Ccdc84 | MY | Medulla | 13.59 | |
| 13.46 | | |||
| Ccdc84 | OLF | Olfactory bulb | 17.67 | |
| 14.57 | | |||
| Ccdc84 | P | Pons | 12.86 | |
| 13.02 | | |||
| Ccdc84 | PAL | Pallidum | 11.31 | |
| 11.36 | | |||
| Ccdc84 | RHP | Retrohippocampal region | 26.23 | |
| 20.57 | | |||
| Ccdc84 | sAMY | Striatum-like amygdalar nuclei | 12.72 | |
| 10 | | |||
| Ccdc84 | STR | Striatum | 9.72 | |
| 7.71 | | |||
| Ccdc84 | STRd | Striatum dorsal region | 9.22 | |
| 7.51 | | |||
| Ccdc84 | STRv | Striatum ventral region | 12.61 | |
| 9.57 | | |||
| Ccdc84 | TH | Thalamus | 12.98 | |
| 10.86 | |