Annotation Detail for VSX2
Basic Information Top
| Gene Symbol: | VSX2 ( CHX10,HOX10,MCOP2,MCOPCB3,RET1 ) |
|---|---|
| Gene Full Name: | visual system homeobox 2 |
| Band: | 14q24.3 |
| Quick Links | Entrez ID:338917; OMIM: 142993; Uniprot ID:VSX2_HUMAN; ENSEMBL ID: ENSG00000119614; HGNC ID: 1975 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.449771
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 16 / 1939121 | 8 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 17 / 3360307 | 5 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 |  |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1318_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.25 ± 1.17 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.98 ± 0.2 | |
| Basal Part of Pons | 1.31 ± 0.36 | |
| Cerebellar Cortex | 1.57 ± 0.7 | |
| Cerebellar Nuclei | 1.98 ± 0.71 | |
| Claustrum | 2.8 ± 1.13 | |
| Epithalamus | 1.49 ± 0.85 | |
| Frontal Lobe | 1.61 ± 0.67 | |
| Globus Pallidus | 2.33 ± 0.37 | |
| Hypothalamus | 1.82 ± 0.67 | |
| Insula | 1.82 ± 0.81 | |
| Limbic Lobe | 1.82 ± 0.79 | |
| Mesencephalon | 1.94 ± 0.79 | |
| Myelencephalon | 1.82 ± 0.71 | |
| Occipital Lobe | 1.79 ± 0.8 | |
| Parietal Lobe | 1.77 ± 0.8 | |
| Pontine Tegmentum | 1.86 ± 0.79 | |
| Striatum | 2.05 ± 0.83 | |
| Subthalamus | 1.95 ± 0.36 | |
| Temporal Lobe | 1.69 ± 0.84 | |
| Thalamus | 1.76 ± 0.7 | |
| White Matter | 2.02 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Chx10 | CB | Cerebellum | 13.64 | |
| 9.14 | | |||
| Chx10 | CTX | Cerebral cortex | 1.84 | |
| 1.56 | | |||
| Chx10 | HIP | Hippocampal region | 4.75 | |
| 2.19 | | |||
| Chx10 | HPF | Hippocampal formation | 4.82 | |
| 3.14 | | |||
| Chx10 | HY | Hypothalamus | 1.8 | |
| 1.45 | | |||
| Chx10 | LSX | Lateral septal complex | 1.38 | |
| 1.58 | | |||
| Chx10 | MB | Midbrain | 1.58 | |
| 1.12 | | |||
| Chx10 | MY | Medulla | 5.01 | |
| 3.57 | | |||
| Chx10 | OLF | Olfactory bulb | 4.92 | |
| 3.39 | | |||
| Chx10 | P | Pons | 5.47 | |
| 3.94 | | |||
| Chx10 | PAL | Pallidum | 1.07 | |
| 0.72 | | |||
| Chx10 | RHP | Retrohippocampal region | 4.95 | |
| 3.93 | | |||
| Chx10 | sAMY | Striatum-like amygdalar nuclei | 2.45 | |
| 2.34 | | |||
| Chx10 | STR | Striatum | 0.62 | |
| 0.57 | | |||
| Chx10 | STRd | Striatum dorsal region | 0.2 | |
| 0.15 | | |||
| Chx10 | STRv | Striatum ventral region | 0.68 | |
| 0.49 | | |||
| Chx10 | TH | Thalamus | 2.1 | |
| 2.25 | |