Annotation Detail for RAB43
Basic Information Top
| Gene Symbol: | RAB43 ( ISY1,MGC90481,RAB11B,RAB41 ) |
|---|---|
| Gene Full Name: | RAB43, member RAS oncogene family |
| Band: | 3q21.3 |
| Quick Links | Entrez ID:339122; OMIM: NA; Uniprot ID:RAB43_HUMAN; ENSEMBL ID: ENSG00000172780; HGNC ID: 19983 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.546542
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 34 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 64 / 3360307 | 19 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 7 / 330442 | 21 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P277295
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.37 ± 0.53 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.24 ± 0.28 | |
| Basal Part of Pons | 6.44 ± 0.41 | |
| Cerebellar Cortex | 6.89 ± 0.24 | |
| Cerebellar Nuclei | 6.35 ± 0.55 | |
| Claustrum | 5.87 ± 0.57 | |
| Epithalamus | 6 ± 0.45 | |
| Frontal Lobe | 6.3 ± 0.38 | |
| Globus Pallidus | 5.58 ± 0.36 | |
| Hypothalamus | 6.04 ± 0.53 | |
| Insula | 6.65 ± 0.25 | |
| Limbic Lobe | 6.64 ± 0.4 | |
| Mesencephalon | 6.16 ± 0.54 | |
| Myelencephalon | 6.42 ± 0.52 | |
| Occipital Lobe | 6.79 ± 0.53 | |
| Parietal Lobe | 6.33 ± 0.36 | |
| Pontine Tegmentum | 6.29 ± 0.51 | |
| Striatum | 6.96 ± 0.6 | |
| Subthalamus | 6.47 ± 0.28 | |
| Temporal Lobe | 6.41 ± 0.44 | |
| Thalamus | 6.22 ± 0.41 | |
| White Matter | 5.55 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1810048P08Rik | CB | Cerebellum | 18.55 | |
| 23.94 | | |||
| 1810048P08Rik | CTX | Cerebral cortex | 6.46 | |
| 4.38 | | |||
| 1810048P08Rik | HIP | Hippocampal region | 7.88 | |
| 7.12 | | |||
| 1810048P08Rik | HPF | Hippocampal formation | 9.26 | |
| 7.88 | | |||
| 1810048P08Rik | HY | Hypothalamus | 5.8 | |
| 3.98 | | |||
| 1810048P08Rik | LSX | Lateral septal complex | 8.97 | |
| 5.63 | | |||
| 1810048P08Rik | MB | Midbrain | 3.31 | |
| 3.11 | | |||
| 1810048P08Rik | MY | Medulla | 7.97 | |
| 7.9 | | |||
| 1810048P08Rik | OLF | Olfactory bulb | 12.73 | |
| 8.91 | | |||
| 1810048P08Rik | P | Pons | 4.33 | |
| 3.94 | | |||
| 1810048P08Rik | PAL | Pallidum | 5.09 | |
| 3.93 | | |||
| 1810048P08Rik | RHP | Retrohippocampal region | 11.73 | |
| 9.02 | | |||
| 1810048P08Rik | sAMY | Striatum-like amygdalar nuclei | 5.1 | |
| 3.5 | | |||
| 1810048P08Rik | STR | Striatum | 4.66 | |
| 3.12 | | |||
| 1810048P08Rik | STRd | Striatum dorsal region | 3.15 | |
| 2.2 | | |||
| 1810048P08Rik | STRv | Striatum ventral region | 7.05 | |
| 4.37 | | |||
| 1810048P08Rik | TH | Thalamus | 2.73 | |
| 2.18 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00097947 | 11 | 69 | 79 | LQIWDTAGQER | Peptide Atlas |